BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0521000 Os07g0521000|AK058482
         (129 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0521000  Succinate dehydrogenase subunit 3                   253   2e-68
Os02g0121800  Succinate dehydrogenase, cytochrome b subunit ...   193   2e-50

>Os07g0521000 Succinate dehydrogenase subunit 3
          Length = 129

 Score =  253 bits (647), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MEKYQSKARFAPLSDAPFALRGALGSSNSSFNNIDHLRQSSSSGQARSYTSSPLGALRPK 60
           MEKYQSKARFAPLSDAPFALRGALGSSNSSFNNIDHLRQSSSSGQARSYTSSPLGALRPK
Sbjct: 1   MEKYQSKARFAPLSDAPFALRGALGSSNSSFNNIDHLRQSSSSGQARSYTSSPLGALRPK 60

Query: 61  MFPSGNRLLHTSRPLSAPVANRPLSPHLPLKKPQLSATFSISHRIFGAALGAVIISIPLA 120
           MFPSGNRLLHTSRPLSAPVANRPLSPHLPLKKPQLSATFSISHRIFGAALGAVIISIPLA
Sbjct: 61  MFPSGNRLLHTSRPLSAPVANRPLSPHLPLKKPQLSATFSISHRIFGAALGAVIISIPLA 120

Query: 121 TKFSLMFDV 129
           TKFSLMFDV
Sbjct: 121 TKFSLMFDV 129



>Os02g0121800 Succinate dehydrogenase, cytochrome b subunit family protein
          Length = 129

 Score =  193 bits (491), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 108/129 (83%), Positives = 114/129 (88%)

Query: 1   MEKYQSKARFAPLSDAPFALRGALGSSNSSFNNIDHLRQSSSSGQARSYTSSPLGALRPK 60
           MEKY S +RFAP  DAPFALRGALGSS SSF++ID LR+SS+  QAR YTS PLGA+RPK
Sbjct: 1   MEKYHSNSRFAPFRDAPFALRGALGSSGSSFSSIDSLRRSSTLEQARGYTSRPLGAVRPK 60

Query: 61  MFPSGNRLLHTSRPLSAPVANRPLSPHLPLKKPQLSATFSISHRIFGAALGAVIISIPLA 120
           M PSG R LHTS PLSAPVANRPLSPHLPLKKPQLSATFSISHRIFGAALGA IISIPLA
Sbjct: 61  MLPSGCRPLHTSHPLSAPVANRPLSPHLPLKKPQLSATFSISHRIFGAALGAAIISIPLA 120

Query: 121 TKFSLMFDV 129
           TKFSLMFDV
Sbjct: 121 TKFSLMFDV 129



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.130    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,170,692
Number of extensions: 170841
Number of successful extensions: 603
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 2
Length of query: 129
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 40
Effective length of database: 12,388,755
Effective search space: 495550200
Effective search space used: 495550200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 150 (62.4 bits)