Os07g0521000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Succinate dehydrogenase subunit 3.
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Os07g0521000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Succinate dehydrogenase subunit 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.99 | 0.205 | 10.8 | 0.806 | 0.446 | -0.137 | -0.0729 | 4.87 | 0.0931 | 3.38 | 30.5 | 3944 | -- | -- |
| 19.66 | 0.207 | 10.9 | 0.0408 | 0.459 | 0.499 | -0.0573 | -- | 0.00472 | 3.32 | 25.37 | 4424 | -- | -- |
| 19 | 0.203 | 10.8 | 0.807 | 0.445 | -0.14 | -- | 4.88 | 0.0934 | 3.38 | 30.6 | 3952 | -- | -- |
| 19.53 | 0.206 | 11 | 0.0183 | 0.451 | 0.488 | -- | -- | -0.0209 | 3.38 | 24 | 4331 | -- | -- |
| 29.65 | 0.254 | 10.8 | 1.01 | -- | -0.178 | -- | 5.69 | 0.129 | -- | 30.9 | 2593 | -- | -- |
| 26.68 | 0.242 | 10.9 | 0.191 | 0.484 | -- | 0.0156 | -- | 0.0221 | 3.27 | -- | -- | -- | -- |
| 26.68 | 0.242 | 10.9 | 0.191 | 0.484 | -- | -- | -- | 0.022 | 3.27 | -- | -- | -- | -- |
| 29.89 | 0.255 | 11 | 0.0382 | -- | 0.543 | -- | -- | -0.0526 | -- | 23.8 | 1174 | -- | -- |
| 19.54 | 0.206 | 11 | -- | 0.448 | 0.493 | -- | -- | -0.0253 | 3.4 | 23.9 | 4278 | -- | -- |
| 39.93 | 0.295 | 10.9 | 0.211 | -- | -- | -- | -- | 0.0347 | -- | -- | -- | -- | -- |
| 27.64 | 0.246 | 11 | -- | 0.488 | -- | -- | -- | 0.000751 | 3.27 | -- | -- | -- | -- |
| 29.92 | 0.255 | 11 | -- | -- | 0.552 | -- | -- | -0.059 | -- | 23.8 | 1174 | -- | -- |
| 41.11 | 0.299 | 11 | -- | -- | -- | -- | -- | 0.0113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.84 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 8 |
| 4 | 17.86 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 5 | 17.88 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 17 | 17.99 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 12 |
| 23 | 18.04 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 62 | 18.23 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 63 | 18.23 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 71 | 18.26 | temperature | 25 | 4320 | < th | dose independent | sin | 12 | NA |
| 80 | 18.31 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 89 | 18.33 | temperature | 25 | 4320 | > th | dose independent | sin | 12 | NA |
| 159 | 18.59 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 184 | 18.66 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 11 |
| 211 | 18.73 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 238 | 18.78 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 269 | 18.84 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 270 | 18.84 | temperature | 25 | 4320 | > th | dose dependent | sin | 12 | NA |
| 306 | 18.89 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 313 | 18.90 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 321 | 18.91 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 322 | 18.91 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 4 |
| 329 | 18.92 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 353 | 18.95 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 20 |
| 373 | 18.98 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 7 |
| 379 | 18.98 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 20 |
| 506 | 19.07 | temperature | 30 | 4320 | > th | dose dependent | sin | 5 | NA |
| 538 | 19.09 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 574 | 19.11 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 747 | 19.21 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 874 | 19.23 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 916 | 19.25 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 8 |