Os02g0121800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Succinate dehydrogenase, cytochrome b subunit family protein.
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Os02g0121800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Succinate dehydrogenase, cytochrome b subunit family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.1 | 0.205 | 10.8 | 0.153 | 0.174 | -0.36 | -0.4 | 4.91 | -0.235 | 15.1 | 27.19 | 620 | -- | -- |
| 22 | 0.218 | 10.9 | -0.379 | 0.115 | 0.139 | -0.325 | -- | -0.335 | 13.5 | 26.72 | 172 | -- | -- |
| 19.47 | 0.205 | 10.8 | 0.161 | 0.17 | -0.419 | -- | 5.39 | -0.252 | 15.2 | 27.9 | 663 | -- | -- |
| 21.77 | 0.217 | 10.9 | -0.393 | 0.12 | 0.223 | -- | -- | -0.311 | 12.5 | 30 | 637 | -- | -- |
| 20.94 | 0.213 | 10.8 | 0.18 | -- | -0.43 | -- | 6.12 | -0.266 | -- | 28.37 | 654 | -- | -- |
| 22.39 | 0.222 | 10.9 | -0.381 | 0.15 | -- | -0.308 | -- | -0.336 | 14.1 | -- | -- | -- | -- |
| 22.63 | 0.223 | 10.9 | -0.39 | 0.16 | -- | -- | -- | -0.337 | 15.2 | -- | -- | -- | -- |
| 22.71 | 0.222 | 10.9 | -0.424 | -- | 0.239 | -- | -- | -0.322 | -- | 29.8 | 605 | -- | -- |
| 26.17 | 0.238 | 10.9 | -- | 0.138 | 0.151 | -- | -- | -0.284 | 14.1 | 30.6 | 630 | -- | -- |
| 24.09 | 0.229 | 10.9 | -0.397 | -- | -- | -- | -- | -0.341 | -- | -- | -- | -- | -- |
| 26.64 | 0.241 | 10.9 | -- | 0.168 | -- | -- | -- | -0.294 | 15.2 | -- | -- | -- | -- |
| 27.38 | 0.244 | 10.9 | -- | -- | 0.187 | -- | -- | -0.28 | -- | 29.9 | 598 | -- | -- |
| 28.24 | 0.248 | 10.9 | -- | -- | -- | -- | -- | -0.297 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.73 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 4 |
| 18 | 18.86 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 16 |
| 20 | 18.96 | temperature | 30 | 720 | < th | dose independent | sin | 4 | NA |
| 24 | 19.00 | temperature | 30 | 720 | > th | dose independent | sin | 5 | NA |
| 65 | 19.13 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 66 | 19.13 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 14 |
| 68 | 19.15 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 87 | 19.19 | humidity | 60 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 96 | 19.21 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 117 | 19.24 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 121 | 19.27 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 126 | 19.29 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 8 |
| 137 | 19.31 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 148 | 19.32 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 16 | 14 |
| 164 | 19.34 | humidity | 60 | 43200 | < th | dose independent | sin | 7 | NA |
| 167 | 19.34 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 23 |
| 171 | 19.37 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 172 | 19.37 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 183 | 19.41 | humidity | 70 | 43200 | < th | dose dependent | rect. | 23 | 13 |
| 200 | 19.44 | humidity | 60 | 43200 | > th | dose independent | sin | 8 | NA |
| 205 | 19.44 | temperature | 25 | 90 | > th | dose dependent | sin | 13 | NA |
| 213 | 19.46 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 11 |
| 243 | 19.54 | humidity | 70 | 43200 | < th | dose dependent | sin | 8 | NA |
| 254 | 19.56 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 23 |
| 260 | 19.56 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 275 | 19.57 | humidity | 70 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 280 | 19.58 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 288 | 19.60 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 8 |
| 290 | 19.61 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 291 | 19.61 | humidity | 70 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 397 | 19.61 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 399 | 19.61 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 17 |
| 401 | 19.62 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 403 | 19.62 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 14 | 14 |
| 411 | 19.63 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 23 |
| 412 | 19.63 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 23 |
| 418 | 19.63 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 420 | 19.63 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 14 |
| 423 | 19.64 | radiation | 20 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 427 | 19.64 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 4 |
| 429 | 19.64 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 10 |
| 430 | 19.64 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 10 |
| 434 | 19.65 | radiation | 20 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 474 | 19.66 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 3 |
| 484 | 19.67 | temperature | 30 | 720 | > th | dose dependent | rect. | 13 | 2 |
| 499 | 19.68 | radiation | 30 | 43200 | > th | dose independent | rect. | 15 | 18 |
| 520 | 19.69 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 8 |
| 531 | 19.69 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 17 |
| 537 | 19.70 | radiation | 10 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 542 | 19.70 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 6 |
| 559 | 19.71 | radiation | 10 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 562 | 19.71 | temperature | 25 | 720 | > th | dose dependent | sin | 1 | NA |
| 582 | 19.72 | radiation | 20 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 722 | 19.76 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 23 |
| 723 | 19.76 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 748 | 19.77 | humidity | 60 | 43200 | < th | dose dependent | sin | 18 | NA |
| 756 | 19.78 | radiation | 30 | 43200 | > th | dose independent | sin | 13 | NA |
| 767 | 19.78 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 7 |
| 774 | 19.79 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 775 | 19.79 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 815 | 19.81 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 821 | 19.81 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 23 |
| 823 | 19.81 | radiation | 30 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 830 | 19.82 | atmosphere | 1000 | 270 | > th | dose independent | sin | 20 | NA |
| 833 | 19.82 | wind | 9 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 840 | 19.82 | radiation | 1 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 843 | 19.82 | radiation | 40 | 43200 | < th | dose dependent | rect. | 14 | 4 |
| 907 | 19.84 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 16 | 3 |
| 920 | 19.84 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 960 | 19.85 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 8 |
| 973 | 19.85 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 13 | 14 |
| 976 | 19.85 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 12 | 15 |
| 987 | 19.85 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 995 | 19.86 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 6 |