BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0515200 Os07g0515200|AK110337
(122 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0515200 Conserved hypothetical protein 251 1e-67
Os08g0470500 178 9e-46
Os06g0666300 177 2e-45
Os04g0298400 146 4e-36
Os02g0746400 139 4e-34
Os04g0594966 139 6e-34
Os01g0697250 139 7e-34
Os03g0269850 138 8e-34
Os03g0782100 134 1e-32
Os04g0582300 109 6e-25
Os06g0274900 89 1e-18
Os12g0635800 67 2e-12
Os02g0729300 Zinc finger, CCHC-type domain containing protein 64 3e-11
>Os07g0515200 Conserved hypothetical protein
Length = 122
Score = 251 bits (640), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 AGFAKGRGIEVHFIQWRSLKNAAGSALMYRVKLCLDGVPMHLWAPDITERIISRTCTLEL 60
AGFAKGRGIEVHFIQWRSLKNAAGSALMYRVKLCLDGVPMHLWAPDITERIISRTCTLEL
Sbjct: 1 AGFAKGRGIEVHFIQWRSLKNAAGSALMYRVKLCLDGVPMHLWAPDITERIISRTCTLEL 60
Query: 61 VEIDLVHPVEAGDMRVNLLWAWTPNPSRIHKRVWRAKPATLSSNRSRFWRCRRSTGNRGS 120
VEIDLVHPVEAGDMRVNLLWAWTPNPSRIHKRVWRAKPATLSSNRSRFWRCRRSTGNRGS
Sbjct: 61 VEIDLVHPVEAGDMRVNLLWAWTPNPSRIHKRVWRAKPATLSSNRSRFWRCRRSTGNRGS 120
Query: 121 SI 122
SI
Sbjct: 121 SI 122
>Os08g0470500
Length = 657
Score = 178 bits (451), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 83/93 (89%), Positives = 84/93 (90%)
Query: 2 GFAKGRGIEVHFIQWRSLKNAAGSALMYRVKLCLDGVPMHLWAPDITERIISRTCTLELV 61
GFAK RGIEVHFIQWRSLKNAAGSALMYRVKLCLDGV MHLWAPDI ERIISRTCTLE V
Sbjct: 94 GFAKARGIEVHFIQWRSLKNAAGSALMYRVKLCLDGVSMHLWAPDIAERIISRTCTLETV 153
Query: 62 EIDLVHPVEAGDMRVNLLWAWTPNPSRIHKRVW 94
E DLVHPV+AGD RV LWAWTPNPSRIHK VW
Sbjct: 154 ETDLVHPVDAGDTRVISLWAWTPNPSRIHKHVW 186
>Os06g0666300
Length = 1185
Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/93 (89%), Positives = 85/93 (91%)
Query: 2 GFAKGRGIEVHFIQWRSLKNAAGSALMYRVKLCLDGVPMHLWAPDITERIISRTCTLELV 61
GFAKG+GIEVHFIQWRSLKNAAGSALMYRVKLCLDGVPMHLWAPDI ERIISRTCTLE V
Sbjct: 54 GFAKGQGIEVHFIQWRSLKNAAGSALMYRVKLCLDGVPMHLWAPDIAERIISRTCTLESV 113
Query: 62 EIDLVHPVEAGDMRVNLLWAWTPNPSRIHKRVW 94
E DLVHPV+AGD RV LWAW PNPSRI KRVW
Sbjct: 114 ETDLVHPVDAGDTRVISLWAWMPNPSRIDKRVW 146
>Os04g0298400
Length = 770
Score = 146 bits (368), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 67/93 (72%), Positives = 77/93 (82%)
Query: 2 GFAKGRGIEVHFIQWRSLKNAAGSALMYRVKLCLDGVPMHLWAPDITERIISRTCTLELV 61
GFAK RGIEVHFI+WRSL+NA G ALM+RV+LCLDG+PMH WA DITER+I RTC LE +
Sbjct: 94 GFAKRRGIEVHFIKWRSLQNALGVALMFRVRLCLDGMPMHAWAADITERLIGRTCALEQI 153
Query: 62 EIDLVHPVEAGDMRVNLLWAWTPNPSRIHKRVW 94
E DLVHPVE+G+ R LWAWT NPS I KR+W
Sbjct: 154 ETDLVHPVESGNTRTINLWAWTVNPSTIPKRMW 186
>Os02g0746400
Length = 1011
Score = 139 bits (351), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 75/93 (80%)
Query: 2 GFAKGRGIEVHFIQWRSLKNAAGSALMYRVKLCLDGVPMHLWAPDITERIISRTCTLELV 61
G+ K RGIE+HFI+WRSL++A G ALM+RV+LCLDGVPMH WA DI ERII RTC LE +
Sbjct: 94 GYVKRRGIEIHFIKWRSLQSALGVALMFRVRLCLDGVPMHAWAADIAERIIGRTCALEQI 153
Query: 62 EIDLVHPVEAGDMRVNLLWAWTPNPSRIHKRVW 94
E D+VHPVE+G+ R LWAWT NPS I KR+W
Sbjct: 154 ETDVVHPVESGNTRSIDLWAWTANPSTIPKRMW 186
>Os04g0594966
Length = 794
Score = 139 bits (349), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 74/93 (79%)
Query: 2 GFAKGRGIEVHFIQWRSLKNAAGSALMYRVKLCLDGVPMHLWAPDITERIISRTCTLELV 61
G+ K GIE+HFI+WRSLK+A G ALM+RV+LCLDGVPMH WA DI ERII RTC LE +
Sbjct: 281 GYVKRHGIEIHFIKWRSLKSALGVALMFRVRLCLDGVPMHAWAADIAERIIGRTCALEQI 340
Query: 62 EIDLVHPVEAGDMRVNLLWAWTPNPSRIHKRVW 94
E D+VHPVE+G+ R LWAWT NPS I KR+W
Sbjct: 341 ETDVVHPVESGNTRSIDLWAWTANPSTIPKRMW 373
>Os01g0697250
Length = 1219
Score = 139 bits (349), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 74/93 (79%)
Query: 2 GFAKGRGIEVHFIQWRSLKNAAGSALMYRVKLCLDGVPMHLWAPDITERIISRTCTLELV 61
G+ K GIE+HFI+WRSL++A G ALM+RV+LCLDGVPMH WA DI ERII RTC LE +
Sbjct: 94 GYVKRHGIEIHFIKWRSLESALGVALMFRVRLCLDGVPMHAWAADIAERIIGRTCALEQI 153
Query: 62 EIDLVHPVEAGDMRVNLLWAWTPNPSRIHKRVW 94
E D+VHPVE+G+ R LWAWT NPS I KR+W
Sbjct: 154 ETDVVHPVESGNTRSIDLWAWTANPSTIPKRMW 186
>Os03g0269850
Length = 1000
Score = 138 bits (348), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 80/106 (75%), Gaps = 5/106 (4%)
Query: 2 GFAKGRGIEVHFIQWRSLKNAAGSALMYRVKLCLDGVPMHLWAPDITERIISRTCTLELV 61
G+ K GIE+HFI+WRSL++A G ALM+RV+LCLDGVPMH WA DI ERII RTC LE +
Sbjct: 281 GYVKRHGIEIHFIKWRSLESALGVALMFRVRLCLDGVPMHAWAADIAERIIGRTCALEQI 340
Query: 62 EIDLVHPVEAGDMRVNLLWAWTPNPSRIHKRVW-----RAKPATLS 102
E D+VHPVE+G+ R LWAWT NPS I KR+W RAK + L+
Sbjct: 341 ETDVVHPVESGNTRSIDLWAWTANPSTIPKRMWLGFTKRAKDSNLA 386
>Os03g0782100
Length = 486
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 83/119 (69%), Gaps = 10/119 (8%)
Query: 2 GFAKGRGIEVHFIQWRSLKNAAGSALMYRVKLCLDGVPMHLWAPDITERIISRTCTLELV 61
G+ K RGIE+HFI+WRSL++A G ALM+RV LCLDGVPMH WA DI ER+I TC LE +
Sbjct: 94 GYVKRRGIEIHFIKWRSLQSALGVALMFRVWLCLDGVPMHAWAADIAERLIGHTCALEQI 153
Query: 62 EIDLVHPVEAGDMRVNLLWAWTPNPSRIHKRVW-----RAK-----PATLSSNRSRFWR 110
E DLVHP+E+G+ R LWAWT NPS I KR+W RAK P ++ N +W+
Sbjct: 154 ETDLVHPMESGNTRSIDLWAWTANPSTIPKRMWLGFTNRAKDQQLAPLLVAENPPEYWQ 212
>Os04g0582300
Length = 414
Score = 109 bits (272), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 66/93 (70%), Gaps = 3/93 (3%)
Query: 2 GFAKGRGIEVHFIQWRSLKNAAGSALMYRVKLCLDGVPMHLWAPDITERIISRTCTLELV 61
GF K G+E+H+++WRSLK+A G ALM+RV+L LDG+P H W DI ER +++TC LE +
Sbjct: 93 GFVKRHGVELHYVKWRSLKSALGVALMFRVRLYLDGIPRHAWEADIVERTVAKTCALESI 152
Query: 62 EIDLVHPVEAGDMRVNLLWAWTPNPSRIHKRVW 94
E L+HP D R +WAWT NPS I KR+W
Sbjct: 153 ETSLIHP---PDTRWISVWAWTGNPSSIPKRIW 182
>Os06g0274900
Length = 216
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/46 (89%), Positives = 41/46 (89%)
Query: 2 GFAKGRGIEVHFIQWRSLKNAAGSALMYRVKLCLDGVPMHLWAPDI 47
GFAKG GIEVHFIQ SLKNA GSALMYRVKLCLDGVPMHLWA DI
Sbjct: 94 GFAKGHGIEVHFIQCCSLKNATGSALMYRVKLCLDGVPMHLWALDI 139
>Os12g0635800
Length = 1020
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/36 (83%), Positives = 31/36 (86%)
Query: 59 ELVEIDLVHPVEAGDMRVNLLWAWTPNPSRIHKRVW 94
E VE DLVHPV+AGD RV LWAWTPNPSRIHKRVW
Sbjct: 439 ESVETDLVHPVDAGDTRVISLWAWTPNPSRIHKRVW 474
>Os02g0729300 Zinc finger, CCHC-type domain containing protein
Length = 469
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 32/40 (80%)
Query: 2 GFAKGRGIEVHFIQWRSLKNAAGSALMYRVKLCLDGVPMH 41
GF K GIE+HFI+WRSL A G ALM+RV+LCLDG+P H
Sbjct: 429 GFVKRNGIELHFIKWRSLSAALGIALMFRVRLCLDGIPRH 468
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,655,823
Number of extensions: 172500
Number of successful extensions: 553
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 554
Number of HSP's successfully gapped: 13
Length of query: 122
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 34
Effective length of database: 12,440,969
Effective search space: 422992946
Effective search space used: 422992946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)