Os02g0729300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCHC-type domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0729300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Zinc finger, CCHC-type domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.26 | 0.33 | 11.5 | 0.987 | 0.403 | -1.13 | 0.248 | 2.43 | 0.656 | 2.34 | 23.19 | 19 | -- | -- |
| 52.34 | 0.34 | 11.6 | 0.613 | 0.434 | -0.942 | -0.247 | -- | 0.542 | 2.27 | 23 | 83 | -- | -- |
| 49.44 | 0.327 | 11.5 | 0.957 | 0.412 | -1.12 | -- | 2.26 | 0.647 | 2.18 | 23.2 | 18 | -- | -- |
| 52.5 | 0.337 | 11.6 | 0.625 | 0.455 | -0.902 | -- | -- | 0.539 | 1.79 | 23 | 78 | -- | -- |
| 55.43 | 0.347 | 11.5 | 1.08 | -- | -1.53 | -- | 2.58 | 0.715 | -- | 23.37 | 18 | -- | -- |
| 66.2 | 0.381 | 11.6 | 0.445 | 0.805 | -- | 0.0165 | -- | 0.404 | 2.51 | -- | -- | -- | -- |
| 66.2 | 0.381 | 11.6 | 0.445 | 0.805 | -- | -- | -- | 0.404 | 2.51 | -- | -- | -- | -- |
| 59.54 | 0.359 | 11.5 | 0.712 | -- | -1.34 | -- | -- | 0.615 | -- | 23.1 | 14 | -- | -- |
| 62.02 | 0.369 | 11.6 | -- | 0.519 | -0.75 | -- | -- | 0.446 | 2.4 | 23.3 | 88 | -- | -- |
| 104.26 | 0.477 | 11.6 | 0.479 | -- | -- | -- | -- | 0.424 | -- | -- | -- | -- | -- |
| 71.42 | 0.395 | 11.6 | -- | 0.813 | -- | -- | -- | 0.355 | 2.52 | -- | -- | -- | -- |
| 72.08 | 0.395 | 11.6 | -- | -- | -1.23 | -- | -- | 0.493 | -- | 23.93 | 9 | -- | -- |
| 110.32 | 0.49 | 11.6 | -- | -- | -- | -- | -- | 0.371 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 3 | 50.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 6 | 51.09 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 8 | 51.10 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 9 | 51.15 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 10 | 51.17 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 15 | 51.30 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 16 | 51.30 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 18 | 51.31 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 44 | 51.49 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 61 | 51.62 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 77 | 51.68 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 138 | 51.86 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 152 | 51.90 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 185 | 52.01 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 202 | 52.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 228 | 52.17 | temperature | 20 | 10 | > th | dose dependent | sin | 23 | NA |
| 283 | 52.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 287 | 52.43 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 290 | 52.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 312 | 52.60 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 2 |
| 322 | 52.64 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 345 | 52.74 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 349 | 52.75 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 355 | 52.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 19 |
| 358 | 52.82 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 16 |
| 361 | 52.83 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 368 | 52.85 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 382 | 52.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 414 | 53.04 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 418 | 53.07 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 429 | 53.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 543 | 53.36 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 571 | 53.42 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 12 |
| 596 | 53.48 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 695 | 53.66 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 697 | 53.66 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 732 | 53.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 737 | 53.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 749 | 53.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 762 | 53.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 807 | 53.83 | temperature | 25 | 30 | < th | dose independent | rect. | 5 | 16 |
| 817 | 53.84 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 844 | 53.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 855 | 53.89 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 863 | 53.91 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 896 | 53.95 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 920 | 53.98 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 6 |
| 921 | 53.98 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 8 |