BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0729300 Os02g0729300|AK072350
(469 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0729300 Zinc finger, CCHC-type domain containing protein 726 0.0
Os03g0199960 182 3e-46
Os04g0582300 181 8e-46
Os04g0594966 178 7e-45
Os01g0697250 177 1e-44
Os03g0269850 177 2e-44
Os04g0298400 177 2e-44
Os02g0746400 175 8e-44
Os03g0782100 169 3e-42
Os08g0470500 157 2e-38
Os04g0152700 155 4e-38
Os06g0274900 135 8e-32
Os12g0635800 119 5e-27
Os06g0666300 107 3e-23
>Os02g0729300 Zinc finger, CCHC-type domain containing protein
Length = 469
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/469 (79%), Positives = 375/469 (79%)
Query: 1 MRLASLPPSWPALQPAHPTLLRHHKPVIXXXXXXXXXXXXXXXXXXXXXQFWLEXXXXXX 60
MRLASLPPSWPALQPAHPTLLRHHKPVI QFWLE
Sbjct: 1 MRLASLPPSWPALQPAHPTLLRHHKPVIPSQPLSGPPLSPRSSTPRRNPQFWLESPPPPP 60
Query: 61 XXXXXXXXADDVSHVSESPDPRSSPTPAMPRSFADAVRLDFNPAKGDGLPVFKSPHGQPP 120
ADDVSHVSESPDPRSSPTPAMPRSFADAVRLDFNPAKGDGLPVFKSPHGQPP
Sbjct: 61 SRSAVPFSADDVSHVSESPDPRSSPTPAMPRSFADAVRLDFNPAKGDGLPVFKSPHGQPP 120
Query: 121 PRPKLKSAITIPAWSTFQRRAYRATPGEEMGVRRIHGTARPGRFNGEWKEVKPRHWWRRS 180
PRPKLKSAITIPAWSTFQRRAYRATPGEEMGVRRIHGTARPGRFNGEWKEVKPRHWWRRS
Sbjct: 121 PRPKLKSAITIPAWSTFQRRAYRATPGEEMGVRRIHGTARPGRFNGEWKEVKPRHWWRRS 180
Query: 181 PHSPESQRPASRRQDAHXXXXXXXXXXXXXXXXXERTAGKCFNCLARDHRAARCRDPVRC 240
PHSPESQRPASRRQDAH ERTAGKCFNCLARDHRAARCRDPVRC
Sbjct: 181 PHSPESQRPASRRQDAHSRRSLAPAASASLRLFRERTAGKCFNCLARDHRAARCRDPVRC 240
Query: 241 FRCFRSGHKANXXXXXXXXXXXXXXXXXKALRRQASTPPPPQNTSHRQASTPSPSLPRAT 300
FRCFRSGHKAN KALRRQASTPPPPQNTSHRQASTPSPSLPRAT
Sbjct: 241 FRCFRSGHKANSCSRREPRPRQPRQSPQKALRRQASTPPPPQNTSHRQASTPSPSLPRAT 300
Query: 301 RPRQPRQSPQNTSCRQASTXXXXXXXXXXXSCNTRMALLGDPATRPDEDHCFVPTPFATE 360
RPRQPRQSPQNTSCRQAST SCNTRMALLGDPATRPDEDHCFVPTPFATE
Sbjct: 301 RPRQPRQSPQNTSCRQASTPPLQLPLPPKPSCNTRMALLGDPATRPDEDHCFVPTPFATE 360
Query: 361 AERKEWESSAVVSWAMRAPASTTAQDVXXXXXXXXXXXXXXVTVTRHHPEAFLIKFEHSS 420
AERKEWESSAVVSWAMRAPASTTAQDV VTVTRHHPEAFLIKFEHSS
Sbjct: 361 AERKEWESSAVVSWAMRAPASTTAQDVEAAFREEFRLRRGEVTVTRHHPEAFLIKFEHSS 420
Query: 421 HCYEAMRKGFVKRNGIELHFIKWRSLSAALGIALMFRVRLCLDGIPRHA 469
HCYEAMRKGFVKRNGIELHFIKWRSLSAALGIALMFRVRLCLDGIPRHA
Sbjct: 421 HCYEAMRKGFVKRNGIELHFIKWRSLSAALGIALMFRVRLCLDGIPRHA 469
>Os03g0199960
Length = 134
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 84/134 (62%), Positives = 103/134 (76%)
Query: 336 MALLGDPATRPDEDHCFVPTPFATEAERKEWESSAVVSWAMRAPASTTAQDVXXXXXXXX 395
MA LGDP+TRP+E+ CF+PTP TE E KEWES+AV++WA +APASTT ++V
Sbjct: 1 MARLGDPSTRPEEEECFIPTPHVTEVELKEWESTAVITWAAKAPASTTPKEVEAIFMEEL 60
Query: 396 XXXXXXVTVTRHHPEAFLIKFEHSSHCYEAMRKGFVKRNGIELHFIKWRSLSAALGIALM 455
V V+RHHPEAF+IKF H HC EA+++G VKR+GIELHF+KWRSL +ALG+ALM
Sbjct: 61 HLREGEVVVSRHHPEAFIIKFAHQRHCVEALKRGSVKRHGIELHFVKWRSLKSALGVALM 120
Query: 456 FRVRLCLDGIPRHA 469
FRVRL LDGIP HA
Sbjct: 121 FRVRLYLDGIPHHA 134
>Os04g0582300
Length = 414
Score = 181 bits (460), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 86/134 (64%), Positives = 105/134 (78%), Gaps = 1/134 (0%)
Query: 336 MALLGDPATRPDEDHCFVPTPFATEAERKEWESSAVVSWAMRAPASTTAQDVXXXXXXXX 395
MA LGDP+TRP+E++ F+PTP ATE E K+WES+A++ WA +APAS T +DV
Sbjct: 1 MAKLGDPSTRPEEEY-FIPTPHATEVELKDWESTAIIPWAAKAPASITPRDVEAIFKEEF 59
Query: 396 XXXXXXVTVTRHHPEAFLIKFEHSSHCYEAMRKGFVKRNGIELHFIKWRSLSAALGIALM 455
V V+RHHPEAFLIKFEH HC EA+RKGFVKR+G+ELH++KWRSL +ALG+ALM
Sbjct: 60 HLREADVFVSRHHPEAFLIKFEHQRHCVEALRKGFVKRHGVELHYVKWRSLKSALGVALM 119
Query: 456 FRVRLCLDGIPRHA 469
FRVRL LDGIPRHA
Sbjct: 120 FRVRLYLDGIPRHA 133
>Os04g0594966
Length = 794
Score = 178 bits (452), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 81/135 (60%), Positives = 101/135 (74%)
Query: 335 RMALLGDPATRPDEDHCFVPTPFATEAERKEWESSAVVSWAMRAPASTTAQDVXXXXXXX 394
+M+ LGDPATRP+ED CF+PT +A + E +EW +AVVSWA RAP +T +DV
Sbjct: 187 KMSQLGDPATRPEEDTCFIPTSYAIDEELREWSETAVVSWAARAPPTTEPRDVEQAFLDE 246
Query: 395 XXXXXXXVTVTRHHPEAFLIKFEHSSHCYEAMRKGFVKRNGIELHFIKWRSLSAALGIAL 454
V V+ HHP+AFLIKF+H HC EA+ KG+VKR+GIE+HFIKWRSL +ALG+AL
Sbjct: 247 FKLRRGEVAVSLHHPQAFLIKFQHRRHCEEALAKGYVKRHGIEIHFIKWRSLKSALGVAL 306
Query: 455 MFRVRLCLDGIPRHA 469
MFRVRLCLDG+P HA
Sbjct: 307 MFRVRLCLDGVPMHA 321
>Os01g0697250
Length = 1219
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 99/134 (73%)
Query: 336 MALLGDPATRPDEDHCFVPTPFATEAERKEWESSAVVSWAMRAPASTTAQDVXXXXXXXX 395
M+ LGDPATRP+ED CF+PT +A + E +EW +AVVSWA AP +T +DV
Sbjct: 1 MSQLGDPATRPEEDTCFIPTSYAIDEELREWSETAVVSWAAHAPPTTEPRDVEQAFLDEF 60
Query: 396 XXXXXXVTVTRHHPEAFLIKFEHSSHCYEAMRKGFVKRNGIELHFIKWRSLSAALGIALM 455
V V+ HHP+AFLIKF+H HC EA+ KG+VKR+GIE+HFIKWRSL +ALG+ALM
Sbjct: 61 KLRRGEVAVSLHHPQAFLIKFQHRQHCEEALAKGYVKRHGIEIHFIKWRSLESALGVALM 120
Query: 456 FRVRLCLDGIPRHA 469
FRVRLCLDG+P HA
Sbjct: 121 FRVRLCLDGVPMHA 134
>Os03g0269850
Length = 1000
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/135 (59%), Positives = 100/135 (74%)
Query: 335 RMALLGDPATRPDEDHCFVPTPFATEAERKEWESSAVVSWAMRAPASTTAQDVXXXXXXX 394
+M+ LGDPATRP+ED CF+PT +A + E +EW +A VSWA RAP +T +DV
Sbjct: 187 KMSQLGDPATRPEEDTCFIPTSYAIDEELREWSETAAVSWAARAPPTTEPRDVEQAFLDE 246
Query: 395 XXXXXXXVTVTRHHPEAFLIKFEHSSHCYEAMRKGFVKRNGIELHFIKWRSLSAALGIAL 454
V V+ HHP+AFLIKF+H HC EA+ KG+VKR+GIE+HFIKWRSL +ALG+AL
Sbjct: 247 FKLRRGEVAVSLHHPQAFLIKFQHRRHCEEALAKGYVKRHGIEIHFIKWRSLESALGVAL 306
Query: 455 MFRVRLCLDGIPRHA 469
MFRVRLCLDG+P HA
Sbjct: 307 MFRVRLCLDGVPMHA 321
>Os04g0298400
Length = 770
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 98/134 (73%)
Query: 336 MALLGDPATRPDEDHCFVPTPFATEAERKEWESSAVVSWAMRAPASTTAQDVXXXXXXXX 395
MA LGDPATRP+ED CF+PT +A + E +EW ++A VSWA+RAP ST A ++
Sbjct: 1 MAQLGDPATRPEEDFCFIPTSYAIDEELREWGNTAAVSWAIRAPPSTGALEIEEVIREEF 60
Query: 396 XXXXXXVTVTRHHPEAFLIKFEHSSHCYEAMRKGFVKRNGIELHFIKWRSLSAALGIALM 455
V V+ HHPEAFLIKF+H HC + ++KGF KR GIE+HFIKWRSL ALG+ALM
Sbjct: 61 KLHQGEVAVSLHHPEAFLIKFQHRRHCEDVVKKGFAKRRGIEVHFIKWRSLQNALGVALM 120
Query: 456 FRVRLCLDGIPRHA 469
FRVRLCLDG+P HA
Sbjct: 121 FRVRLCLDGMPMHA 134
>Os02g0746400
Length = 1011
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 79/134 (58%), Positives = 99/134 (73%)
Query: 336 MALLGDPATRPDEDHCFVPTPFATEAERKEWESSAVVSWAMRAPASTTAQDVXXXXXXXX 395
M+ LGDPATRP+ED CF+PT +A + E +EW +A VSWA AP++TT +DV
Sbjct: 1 MSQLGDPATRPEEDTCFIPTSYAIDEELREWSETAAVSWAAHAPSTTTPRDVEQAFLDEF 60
Query: 396 XXXXXXVTVTRHHPEAFLIKFEHSSHCYEAMRKGFVKRNGIELHFIKWRSLSAALGIALM 455
V V+ +HP+AFLIKF+H HC EA+ KG+VKR GIE+HFIKWRSL +ALG+ALM
Sbjct: 61 QLRRGEVAVSLYHPQAFLIKFQHRRHCEEALVKGYVKRRGIEIHFIKWRSLQSALGVALM 120
Query: 456 FRVRLCLDGIPRHA 469
FRVRLCLDG+P HA
Sbjct: 121 FRVRLCLDGVPMHA 134
>Os03g0782100
Length = 486
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 95/134 (70%)
Query: 336 MALLGDPATRPDEDHCFVPTPFATEAERKEWESSAVVSWAMRAPASTTAQDVXXXXXXXX 395
M LGDPATRP+ED F+PT +A + E +EW +A VSWA RAP ST QDV
Sbjct: 1 MTQLGDPATRPEEDTIFIPTSYAIDEELREWNETAAVSWAARAPPSTGPQDVEQAFLDEF 60
Query: 396 XXXXXXVTVTRHHPEAFLIKFEHSSHCYEAMRKGFVKRNGIELHFIKWRSLSAALGIALM 455
V V+ HHP+AFLIKF+H HC EA+ KG+VKR GIE+HFIKWRSL +ALG+ALM
Sbjct: 61 KLCRGDVAVSLHHPQAFLIKFQHRRHCEEAIAKGYVKRRGIEIHFIKWRSLQSALGVALM 120
Query: 456 FRVRLCLDGIPRHA 469
FRV LCLDG+P HA
Sbjct: 121 FRVWLCLDGVPMHA 134
>Os08g0470500
Length = 657
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 92/133 (69%)
Query: 336 MALLGDPATRPDEDHCFVPTPFATEAERKEWESSAVVSWAMRAPASTTAQDVXXXXXXXX 395
MA LGDP T ED F+PT A +AE +EWES+A V+WAMRAP + TA+DV
Sbjct: 1 MAQLGDPETHLLEDVLFIPTSHAIDAELREWESTAAVTWAMRAPPTVTAKDVERIISDEF 60
Query: 396 XXXXXXVTVTRHHPEAFLIKFEHSSHCYEAMRKGFVKRNGIELHFIKWRSLSAALGIALM 455
+ VT HHPEAF++KF+H SHC EA+++GF K GIE+HFI+WRSL A G ALM
Sbjct: 61 GLRAGELAVTLHHPEAFILKFKHRSHCEEAVKQGFAKARGIEVHFIQWRSLKNAAGSALM 120
Query: 456 FRVRLCLDGIPRH 468
+RV+LCLDG+ H
Sbjct: 121 YRVKLCLDGVSMH 133
>Os04g0152700
Length = 918
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 90/122 (73%), Gaps = 1/122 (0%)
Query: 336 MALLGDPATRPDEDHCFVPTPFATEAERKEWESSAVVSWAMRAPASTTAQDVXXXXXXXX 395
MA LGDP+T+P+E+ CF+PTP ATE E KEWES+AV++W RAPASTT ++
Sbjct: 1 MAHLGDPSTQPEEE-CFIPTPHATEVELKEWESTAVITWVARAPASTTPKEAEAIFMEEL 59
Query: 396 XXXXXXVTVTRHHPEAFLIKFEHSSHCYEAMRKGFVKRNGIELHFIKWRSLSAALGIALM 455
V V+RHHPEAF+IKF H HC EA+++G VKR GIELHF+KWR L +ALG+ALM
Sbjct: 60 HLREGEVVVSRHHPEAFIIKFAHQRHCVEALKRGSVKRRGIELHFVKWRGLKSALGVALM 119
Query: 456 FR 457
FR
Sbjct: 120 FR 121
>Os06g0274900
Length = 216
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 86/133 (64%)
Query: 336 MALLGDPATRPDEDHCFVPTPFATEAERKEWESSAVVSWAMRAPASTTAQDVXXXXXXXX 395
MA LGD TRP E F+ T + E +E ES+ VV+WAMRAP S TA+DV
Sbjct: 1 MAQLGDLKTRPVEGVVFISTSHIIDGELREMESTVVVTWAMRAPPSVTAKDVECAIAYEF 60
Query: 396 XXXXXXVTVTRHHPEAFLIKFEHSSHCYEAMRKGFVKRNGIELHFIKWRSLSAALGIALM 455
+TV+ H PEAFL+K++H HC E +++GF K +GIE+HFI+ SL A G ALM
Sbjct: 61 GLCISELTVSLHFPEAFLLKYKHRRHCEETVKQGFAKGHGIEVHFIQCCSLKNATGSALM 120
Query: 456 FRVRLCLDGIPRH 468
+RV+LCLDG+P H
Sbjct: 121 YRVKLCLDGVPMH 133
>Os12g0635800
Length = 1020
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 93/187 (49%), Gaps = 28/187 (14%)
Query: 70 DDVSHVSESPDPRSSPTPAMPRSFADAVRLDFNPAKGDGLPVFKSPHGQPPPRPKLKSAI 129
D +HVSES P PRSF DAVR + P QPPPRP LKS
Sbjct: 56 DSTTHVSESTVP--------PRSFVDAVRRSPGASSSRLAP-------QPPPRPTLKSVF 100
Query: 130 TIPA-WSTFQRRAYRATPGEEMGV---RRIHGTARPGRFNGE--WKEVKPRHWWRRSPHS 183
T+P+ RRAY P E + RR T RP E W EVKPR WWR HS
Sbjct: 101 TVPSPRRDAYRRAYELAPRERRDILPHRRT--TPRPAFTPAEPGWTEVKPRRWWREKGHS 158
Query: 184 PESQRPASRRQDAHXXXXXXXXXXXXXXXXXERTAGKCFNCLARDHRAARCRDPVRCFRC 243
QRP SRR+D RT G+CF CLARDHRA+ CRDP RCF C
Sbjct: 159 IHGQRPDSRREDG-----AGRRAALSLEEFKARTRGRCFVCLARDHRASACRDPPRCFTC 213
Query: 244 FRSGHKA 250
FR+GH+A
Sbjct: 214 FRTGHRA 220
>Os06g0666300
Length = 1185
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 62/93 (66%)
Query: 376 MRAPASTTAQDVXXXXXXXXXXXXXXVTVTRHHPEAFLIKFEHSSHCYEAMRKGFVKRNG 435
MRAP S TA+DV + ++ H EAFL+KF+H HC EA++KGF K G
Sbjct: 1 MRAPPSVTAKDVERVLADEFGLRSGEIAMSLHFREAFLLKFKHHRHCEEAVKKGFAKGQG 60
Query: 436 IELHFIKWRSLSAALGIALMFRVRLCLDGIPRH 468
IE+HFI+WRSL A G ALM+RV+LCLDG+P H
Sbjct: 61 IEVHFIQWRSLKNAAGSALMYRVKLCLDGVPMH 93
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,572,924
Number of extensions: 713974
Number of successful extensions: 5887
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 5869
Number of HSP's successfully gapped: 16
Length of query: 469
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 365
Effective length of database: 11,605,545
Effective search space: 4236023925
Effective search space used: 4236023925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)