Os07g0515200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0515200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 435.22 | 0.98 | 3.58 | -0.717 | 1.57 | 3.38 | 0.402 | -1.85 | 0.056 | 3.93 | 0.9 | 275 | 13.1 | -- |
| 436.64 | 0.973 | 3.57 | -0.655 | 1.62 | 3.4 | 1.79 | -- | 0.0646 | 3.86 | 0.8998 | 274 | 13.2 | -- |
| 435.38 | 0.972 | 3.58 | -0.732 | 1.62 | 3.4 | -- | -2.23 | 0.062 | 3.76 | 0.9901 | 271 | 13.2 | -- |
| 445.77 | 0.983 | 3.58 | -0.666 | 1.61 | 3.39 | -- | -- | 0.0666 | 4.02 | 0.89 | 279 | 13.1 | -- |
| 486.25 | 1.03 | 3.66 | -0.626 | -- | 2.45 | -- | -2.65 | -0.194 | -- | 30.25 | 380 | 13.2 | -- |
| 535.76 | 1.09 | 3.58 | -0.434 | 1.28 | -- | -1.37 | -- | 0.21 | 16.8 | -- | -- | -- | -- |
| 540.49 | 1.09 | 3.58 | -0.441 | 1.28 | -- | -- | -- | 0.203 | 16.9 | -- | -- | -- | -- |
| 474.56 | 1.01 | 3.62 | -0.671 | -- | 2.25 | -- | -- | -0.0548 | -- | 24.16 | 326 | 9.38 | -- |
| 457.04 | 0.996 | 3.57 | -- | 1.58 | 3.33 | -- | -- | 0.131 | 3.9 | 1 | 282 | 13.3 | -- |
| 626.88 | 1.17 | 3.57 | -0.488 | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
| 545.61 | 1.09 | 3.57 | -- | 1.29 | -- | -- | -- | 0.252 | 16.9 | -- | -- | -- | -- |
| 460.71 | 1 | 3.54 | -- | -- | 2.38 | -- | -- | 0.267 | -- | 3.59 | 230 | 10.1 | -- |
| 633.16 | 1.17 | 3.56 | -- | -- | -- | -- | -- | 0.224 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 435.63 | radiation | 1.0 | 270 | > th | dose independent | sin | 19 | NA |
| 3 | 437.34 | temperature | 25.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 5 | 437.45 | radiation | 1.0 | 270 | < th | dose independent | sin | 19 | NA |
| 7 | 437.60 | radiation | 1.0 | 270 | < th | dose dependent | sin | 20 | NA |
| 11 | 439.05 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 25 | 441.10 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 15 |
| 26 | 441.62 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 15 |
| 29 | 442.30 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 11 | 7 |
| 45 | 443.15 | wind | 3.0 | 90 | > th | dose independent | rect. | 13 | 6 |
| 62 | 444.96 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 13 | 6 |
| 86 | 447.08 | humidity | 80.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 101 | 448.00 | wind | 1.0 | 90 | > th | dose dependent | rect. | 13 | 6 |
| 184 | 451.32 | radiation | 1.0 | 270 | > th | dose dependent | sin | 15 | NA |
| 201 | 451.89 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 207 | 452.16 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 338 | 456.27 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 15 |
| 346 | 456.41 | humidity | 70.0 | 270 | > th | dose independent | rect. | 15 | 9 |
| 348 | 456.55 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 13 | 5 |
| 370 | 456.78 | temperature | 25.0 | 10 | > th | dose independent | rect. | 14 | 6 |
| 379 | 456.97 | wind | 1.0 | 10 | > th | dose dependent | rect. | 13 | 7 |
| 385 | 457.06 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 16 |
| 426 | 458.17 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 438 | 458.55 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 16 |
| 455 | 458.67 | humidity | 70.0 | 270 | > th | dose independent | rect. | 7 | 16 |
| 477 | 459.01 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 7 |
| 480 | 459.03 | temperature | 10.0 | 90 | > th | dose independent | rect. | 13 | 6 |
| 482 | 459.03 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 13 | 6 |
| 484 | 459.03 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 18 |
| 485 | 459.03 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 18 |
| 486 | 459.15 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 13 | 6 |
| 487 | 459.15 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 13 | 6 |
| 527 | 459.91 | temperature | 15.0 | 270 | > th | dose independent | rect. | 24 | 17 |
| 528 | 459.91 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 17 |
| 529 | 459.92 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 18 |
| 587 | 460.86 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 12 | 5 |
| 628 | 461.57 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 19 | 18 |
| 664 | 461.97 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 18 |
| 665 | 461.97 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 18 |
| 672 | 462.10 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 7 |
| 673 | 462.11 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 683 | 462.26 | wind | 9.0 | 90 | < th | dose independent | rect. | 13 | 6 |
| 684 | 462.28 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 696 | 462.49 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 703 | 462.55 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 715 | 462.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 7 |
| 716 | 462.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 734 | 463.02 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 752 | 463.29 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 16 |
| 760 | 463.37 | humidity | 90.0 | 10 | < th | dose independent | rect. | 14 | 6 |
| 767 | 463.48 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 779 | 463.63 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 805 | 463.86 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 13 | 17 |
| 837 | 464.11 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 19 |
| 838 | 464.11 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 19 |
| 850 | 464.23 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 7 |
| 860 | 464.38 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 864 | 464.42 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 17 |
| 865 | 464.43 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 7 |
| 876 | 464.50 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 17 |
| 877 | 464.50 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 17 |
| 914 | 464.79 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 6 |
| 933 | 465.00 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 935 | 465.01 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 941 | 465.06 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 966 | 465.33 | wind | 7.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 970 | 465.38 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 8 |
| 972 | 465.39 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 973 | 465.39 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 974 | 465.39 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 976 | 465.39 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 977 | 465.39 | radiation | 40.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 978 | 465.39 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 16 |
| 979 | 465.40 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 11 | 18 |
| 987 | 465.52 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 9 |
| 988 | 465.52 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 992 | 465.58 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 7 |