BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0511000 Os07g0511000|AK070461
(666 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0511000 Conserved hypothetical protein 1172 0.0
Os03g0295700 Conserved hypothetical protein 121 2e-27
>Os07g0511000 Conserved hypothetical protein
Length = 666
Score = 1172 bits (3032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/666 (87%), Positives = 583/666 (87%)
Query: 1 MHQLXXXXXXXXXXXXXXXXXXXXXLVSRARTAIHSAAARVLTDIKADLRDADGSGALRA 60
MHQL LVSRARTAIHSAAARVLTDIKADLRDADGSGALRA
Sbjct: 1 MHQLPSPAPSSASSSPSTTTATTTSLVSRARTAIHSAAARVLTDIKADLRDADGSGALRA 60
Query: 61 PSPRPSADRHPDSIAAVVGSPRDEAPDIISSPDGDTSNIEPDSTSSTKMAFPSVSVVKQL 120
PSPRPSADRHPDSIAAVVGSPRDEAPDIISSPDGDTSNIEPDSTSSTKMAFPSVSVVKQL
Sbjct: 61 PSPRPSADRHPDSIAAVVGSPRDEAPDIISSPDGDTSNIEPDSTSSTKMAFPSVSVVKQL 120
Query: 121 VAAIDNGKNFKSMNDMRSNGDQLLKEKGGLSLSVVKSLVRREKDERSSSEFVGDDETQSL 180
VAAIDNGKNFKSMNDMRSNGDQLLKEKGGLSLSVVKSLVRREKDERSSSEFVGDDETQSL
Sbjct: 121 VAAIDNGKNFKSMNDMRSNGDQLLKEKGGLSLSVVKSLVRREKDERSSSEFVGDDETQSL 180
Query: 181 MYTLFKLEEHFPHDKSQCNSELHHSISLPKDLHGAPPGSFTHQIAETIGKISSVYKMAFF 240
MYTLFKLEEHFPHDKSQCNSELHHSISLPKDLHGAPPGSFTHQIAETIGKISSVYKMAFF
Sbjct: 181 MYTLFKLEEHFPHDKSQCNSELHHSISLPKDLHGAPPGSFTHQIAETIGKISSVYKMAFF 240
Query: 241 WQSLVLELKKLWSDGQPVPRMPLDAAPDLNCCLLHQEIQVINCCIXXXXXXXXXXESLDS 300
WQSLVLELKKLWSDGQPVPRMPLDAAPDLNCCLLHQEIQVINCCI ESLDS
Sbjct: 241 WQSLVLELKKLWSDGQPVPRMPLDAAPDLNCCLLHQEIQVINCCIARKKRRKAAKESLDS 300
Query: 301 LLKRASIDNSNHLYSNGDSPDSEMYIKGSAGDNVLRLGADHPSENLTLLETGELVYSPTL 360
LLKRASIDNSNHLYSNGDSPDSEMYIKGSAGDNVLRLGADHPSENLTLLETGELVYSPTL
Sbjct: 301 LLKRASIDNSNHLYSNGDSPDSEMYIKGSAGDNVLRLGADHPSENLTLLETGELVYSPTL 360
Query: 361 QEGPIMTAELIKETEELVLRTGSVGAGCSQLLSDMQAFKAANPGCVLEDFIRWHSPPDWS 420
QEGPIMTAELIKETEELVLRTGSVGAGCSQLLSDMQAFKAANPGCVLEDFIRWHSPPDWS
Sbjct: 361 QEGPIMTAELIKETEELVLRTGSVGAGCSQLLSDMQAFKAANPGCVLEDFIRWHSPPDWS 420
Query: 421 EDCXXXXXXXXXXXXXXXXXXXXMQTKEGNLWKELWGAAKPIPAVEQAPIYDEDLAVESI 480
EDC MQTKEGNLWKELWGAAKPIPAVEQAPIYDEDLAVESI
Sbjct: 421 EDCAASSAEVGEGSSRRGRLSERMQTKEGNLWKELWGAAKPIPAVEQAPIYDEDLAVESI 480
Query: 481 FDALEVIEPSKLFEQLLAVILSVCFVAAELVLPAGSNLSKLFYDCKDYILSIYQDDISKE 540
FDALEVIEPSKLFEQLLAVILSVCFVAAELVLPAGSNLSKLFYDCKDYILSIYQDDISKE
Sbjct: 481 FDALEVIEPSKLFEQLLAVILSVCFVAAELVLPAGSNLSKLFYDCKDYILSIYQDDISKE 540
Query: 541 KLDEICKVYETMEAIVTHPEETLQIMEAPDEKSPLESKNRFKIKLNFIGKDRHPLWKRAX 600
KLDEICKVYETMEAIVTHPEETLQIMEAPDEKSPLESKNRFKIKLNFIGKDRHPLWKRA
Sbjct: 541 KLDEICKVYETMEAIVTHPEETLQIMEAPDEKSPLESKNRFKIKLNFIGKDRHPLWKRAP 600
Query: 601 XXXXXXXXXXXXXXXXXXXTKIFSNLLDKKVSIFSKKNAKPTTEVXXXXXXXXXXXXFDD 660
TKIFSNLLDKKVSIFSKKNAKPTTEV FDD
Sbjct: 601 KEEKKSSPKDEKRSSEERSTKIFSNLLDKKVSIFSKKNAKPTTEVPPPPPPSSAPGPFDD 660
Query: 661 SEWTIL 666
SEWTIL
Sbjct: 661 SEWTIL 666
>Os03g0295700 Conserved hypothetical protein
Length = 899
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/364 (27%), Positives = 156/364 (42%), Gaps = 44/364 (12%)
Query: 210 KDLHGAPPGSFTHQI---AETIGKISSVYKMAFFWQSLVLELKKLWSDGQPVPRMPLDAA 266
+ + GAP S Q A G + +A W V E++ W + + +PRM ++
Sbjct: 422 RAMKGAPSDSLFAQFCLHALWFGNCH-IRAIAVLWIDFVREIRWCWEESERLPRMKSTSS 480
Query: 267 PDLNCCLLHQEIQVINCCIXXXXXXXXXXESLDSLLKRASIDNSNHLYSNGDSPDSEMYI 326
DL CL+HQ++ ++ CI E SL + D H + +G I
Sbjct: 481 IDLCTCLIHQKLHMLAICI----------ERKKSLSREKGTD---HAHEDG--------I 519
Query: 327 KGSAGDNVLRLGADHPSENLTLLETGELVYSPTLQEGPIMTAELIKETEELVLRTGSVGA 386
S N R G+ ++ LL T + +++P Q+ +MT ++ +E G+
Sbjct: 520 SNSVAQNKTRKGSAGVVPSMMLLNTFQEMHAPYTQDALLMTEDMHEERLHAAEAFGNAVG 579
Query: 387 GCSQL-----LSDMQAFKAANPGCVLEDFIRWHSPPDW-SEDCXXXXXXXXXXXXXXXXX 440
QL SDM AFKAANP V EDFIRWHSP DW SED
Sbjct: 580 LSGQLERDVLSSDMSAFKAANPDAVFEDFIRWHSPGDWVSEDGAEDSSGWPPKGRLSQR- 638
Query: 441 XXXMQTKEGNLWKELWGAAKPIPAVEQAPIYDEDLAVESIFDALEVIEPSKLFEQLLAVI 500
++ GN+W+++W A +P EQ + D E + LE + P +L EQ++ +
Sbjct: 639 ----MSEHGNMWRKIWNDAPALPVSEQKFLLDPIREGEKVIHYLETLRPQQLLEQMVCTV 694
Query: 501 LSVCFVAAELVLPAGSNLSK-----LFYDCKDYILSIY-QDDIS--KEKLDEICKVYETM 552
G L K L+ + S+ + DIS + L +C+V+E +
Sbjct: 695 FKSSADILNRTTYGGFKLMKTKMDQLYATLASTLKSLQGKSDISDLSDDLKRLCQVFEHI 754
Query: 553 EAIV 556
E ++
Sbjct: 755 EKLL 758
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,823,525
Number of extensions: 858882
Number of successful extensions: 1939
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1935
Number of HSP's successfully gapped: 2
Length of query: 666
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 559
Effective length of database: 11,448,903
Effective search space: 6399936777
Effective search space used: 6399936777
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 159 (65.9 bits)