Os07g0511000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0511000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.28 | 0.259 | 9.9 | 0.278 | 0.428 | -0.445 | -0.385 | -0.398 | 0.304 | 22 | 10.31 | 202 | -- | -- |
| 30.72 | 0.258 | 9.89 | 0.286 | 0.442 | -0.429 | -0.192 | -- | 0.317 | 22.1 | 10.02 | 205 | -- | -- |
| 30.61 | 0.258 | 9.9 | 0.284 | 0.417 | -0.455 | -- | -0.168 | 0.302 | 22 | 10.03 | 203 | -- | -- |
| 30.7 | 0.258 | 9.89 | 0.292 | 0.427 | -0.436 | -- | -- | 0.316 | 22.2 | 10.03 | 198 | -- | -- |
| 35.76 | 0.279 | 9.89 | 0.23 | -- | -0.608 | -- | -0.071 | 0.288 | -- | 5.12 | 123 | -- | -- |
| 34.51 | 0.275 | 9.91 | 0.233 | 0.762 | -- | 0.0863 | -- | 0.274 | 23.9 | -- | -- | -- | -- |
| 34.55 | 0.275 | 9.91 | 0.23 | 0.761 | -- | -- | -- | 0.274 | 23.9 | -- | -- | -- | -- |
| 35.77 | 0.279 | 9.89 | 0.224 | -- | -0.607 | -- | -- | 0.286 | -- | 5.05 | 129 | -- | -- |
| 32.73 | 0.266 | 9.9 | -- | 0.393 | -0.448 | -- | -- | 0.271 | 21.8 | 8.271 | 197 | -- | -- |
| 71.04 | 0.394 | 9.89 | 0.253 | -- | -- | -- | -- | 0.284 | -- | -- | -- | -- | -- |
| 35.94 | 0.28 | 9.91 | -- | 0.764 | -- | -- | -- | 0.248 | 23.9 | -- | -- | -- | -- |
| 37.13 | 0.284 | 9.9 | -- | -- | -0.61 | -- | -- | 0.258 | -- | 5.467 | 130 | -- | -- |
| 72.73 | 0.398 | 9.9 | -- | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.01 | radiation | 1 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 2 | 29.02 | radiation | 1 | 270 | < th | dose independent | rect. | 4 | 14 |
| 5 | 29.29 | radiation | 1 | 270 | < th | dose independent | sin | 1 | NA |
| 6 | 29.38 | radiation | 1 | 270 | > th | dose independent | sin | 1 | NA |
| 7 | 29.43 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 8 | 29.44 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 10 | 29.51 | radiation | 1 | 270 | < th | dose dependent | sin | 1 | NA |
| 12 | 29.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 18 | 29.58 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 28 | 29.68 | radiation | 1 | 270 | > th | dose independent | rect. | 7 | 10 |
| 32 | 29.71 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 5 | 17 |
| 34 | 29.72 | temperature | 30 | 30 | < th | dose independent | rect. | 5 | 17 |
| 43 | 29.76 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 46 | 29.78 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 10 |
| 54 | 29.82 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 20 |
| 62 | 29.86 | humidity | 80 | 30 | > th | dose independent | rect. | 5 | 17 |
| 68 | 29.88 | radiation | 20 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 92 | 29.96 | radiation | 1 | 270 | < th | dose dependent | rect. | 7 | 11 |
| 93 | 29.96 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 100 | 29.98 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 5 | 17 |
| 111 | 29.99 | radiation | 20 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 117 | 30.01 | radiation | 1 | 270 | < th | dose independent | rect. | 7 | 11 |
| 135 | 30.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 16 |
| 137 | 30.03 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 162 | 30.08 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 17 |
| 188 | 30.12 | humidity | 80 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 192 | 30.13 | humidity | 80 | 30 | < th | dose independent | sin | 23 | NA |
| 194 | 30.13 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 13 |
| 204 | 30.14 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 205 | 30.14 | humidity | 60 | 90 | > th | dose dependent | sin | 1 | NA |
| 303 | 30.25 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 13 |
| 388 | 30.33 | humidity | 50 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 393 | 30.34 | temperature | 15 | 30 | > th | dose dependent | sin | 0 | NA |
| 434 | 30.38 | radiation | 20 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 493 | 30.42 | humidity | 80 | 30 | > th | dose independent | rect. | 5 | 13 |
| 496 | 30.42 | radiation | 20 | 270 | < th | dose independent | rect. | 12 | 21 |
| 508 | 30.43 | humidity | 80 | 90 | > th | dose dependent | sin | 23 | NA |
| 550 | 30.46 | radiation | 10 | 270 | > th | dose independent | rect. | 15 | 23 |
| 576 | 30.47 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 596 | 30.49 | temperature | 30 | 90 | < th | dose independent | sin | 3 | NA |
| 652 | 30.52 | radiation | 1 | 90 | > th | dose independent | rect. | 9 | 9 |
| 658 | 30.52 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 671 | 30.52 | radiation | 40 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 682 | 30.53 | humidity | 60 | 30 | > th | dose independent | rect. | 5 | 17 |
| 694 | 30.54 | humidity | 80 | 30 | > th | dose independent | sin | 0 | NA |
| 700 | 30.54 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 9 |
| 781 | 30.58 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 8 | 9 |
| 861 | 30.62 | radiation | 1 | 270 | > th | dose dependent | sin | 3 | NA |
| 889 | 30.64 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 7 |
| 958 | 30.66 | radiation | 10 | 1440 | < th | dose independent | rect. | 23 | 6 |
| 972 | 30.66 | radiation | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |