BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0511000 Os07g0511000|AK070461
         (666 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55060.1  | chr5:22342079-22346400 FORWARD LENGTH=663          447   e-125
AT5G58510.1  | chr5:23648287-23654421 REVERSE LENGTH=964          129   4e-30

>AT5G55060.1 | chr5:22342079-22346400 FORWARD LENGTH=663
          Length = 662

 Score =  447 bits (1149), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/538 (45%), Positives = 337/538 (62%), Gaps = 20/538 (3%)

Query: 110 AFPSVSVVKQLVAAIDNGKNFKSMNDM--RSNGDQLLKEKGGLSLSVVKSLVRREKDERS 167
           + P  SVVKQL  AI+ GK  K++ D    S     ++E+GGLSLS VKSLV  EK+++ 
Sbjct: 133 SIPLASVVKQLAVAIEAGKRAKNVKDFVASSGSSSPVRERGGLSLSAVKSLVLGEKEDKL 192

Query: 168 SSEFVGDDETQSLMYTLFKLEEHFPHDK--SQCNSELHHSISLPKDLHGAPPGSFTHQIA 225
             +   +D+  SL+  LF ++  F   K  S   S  + S S  KDLH APP SF  ++A
Sbjct: 193 GFDSGDEDKLVSLINALFNVDSGFLSRKIVSDLESPTNRS-SFAKDLHAAPPSSFVVKLA 251

Query: 226 ETIGKISSVYKMAFFWQSLVLELKKLWSDGQPVPRMPLDAAPDLNCCLLHQEIQVINCCI 285
           E IG  ++  +MA FW  +V EL++ W++ + +P +PLD  PDL  CLLHQ +QVINCC+
Sbjct: 252 EVIGSFTTPRRMALFWCRVVEELRRFWNEEKHIPWIPLDNNPDLKSCLLHQWLQVINCCL 311

Query: 286 XXXXXXXXXXESLDSLLKRASIDNSNHLYSNGDSPDSEMYIKGSAGDNVLRLGADHPSEN 345
                     E+LD+++++AS  ++N      +S  S +Y K ++G+ +LRLG  +  EN
Sbjct: 312 ARKARNVAASEALDAVMRQAS--SANEKSDVSESMGSLLYAKSNSGELILRLGVYNQVEN 369

Query: 346 LTLLETGELVYSPTLQEGPIMTAELIKETEELVLRTGSVGAGCSQLLSDMQAFKAANPGC 405
           LT+LETGE VYSP  QEGP++T +LI+ETEELVLRTGS+GAGCSQLLSDMQAFKAANPGC
Sbjct: 370 LTMLETGEPVYSPITQEGPLLTEDLIRETEELVLRTGSMGAGCSQLLSDMQAFKAANPGC 429

Query: 406 VLEDFIRWHSPPDWSEDCXXXXXXXXXXXXXXXXXXXXMQTKEGNLWKELWGAAKPIPAV 465
           +LEDF+RWHSPPDW+E+                     MQ KEGNLW+ELW  AKP+PAV
Sbjct: 430 ILEDFVRWHSPPDWTEN---GNMSGDDSSPVRGQLSTRMQ-KEGNLWRELWETAKPLPAV 485

Query: 466 EQAPIYDEDLAVESIFDALEVIEPSKLFEQLLAVILSVCFVAAELVLPAGSNLSKLFYDC 525
           +QAP++DEDLAVE I + LE I  ++LFEQL   ++S+ FV  E VL    +LSKLF++C
Sbjct: 486 KQAPLFDEDLAVEGILNYLEDIPAAELFEQLFTSLVSLGFVMVEPVLATNDDLSKLFFEC 545

Query: 526 KDYILSIYQDDISKEKLDEICKVYETMEAIVTHPEETLQIMEAPDE--KSPLESKNRFKI 583
           KDY+++I Q     +KLD++C+VYET+E ++  PEE L+ M+  +E   S  E+K RFK 
Sbjct: 546 KDYVVAICQGGAWTDKLDDLCQVYETVETMLLRPEEVLRSMKQTEESPSSGSETKRRFK- 604

Query: 584 KLNFIGKDRHPLWKRAXXXXXXXXXXXXXXXXXXXXTKIFSNLLDKKVSIFSKKNAKP 641
           +L FI +                              + FS+L D K S+FSK+  +P
Sbjct: 605 RLGFIFRGSK------ERKQTRVPSETEQKSTEPSPRQSFSSLFDGKSSLFSKRPPRP 656



>AT5G58510.1 | chr5:23648287-23654421 REVERSE LENGTH=964
          Length = 963

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 166/378 (43%), Gaps = 56/378 (14%)

Query: 233 SVYKMAFFWQSLVLELKKLWSDGQPVPRMPLDAAPDLNCCLLHQEIQVINCCIXXXXXXX 292
           ++  +AF W   V E++  W + QP+P+MP+D + DL+ CL++Q++ ++  CI       
Sbjct: 438 NIRAIAFLWIEFVREVRWCWEETQPLPKMPIDGSIDLSSCLINQKLHLLAICIEKKREMN 497

Query: 293 XXXESLDSLL------------------KRASIDNSNHLYSNGDSPDSEMYIK------- 327
              E LD +                   KR +  +   L    DS  +E   K       
Sbjct: 498 E--EFLDCIGSDDSSDASVSMEEHHKVDKRRNTSSEEELRRKRDSSIAEDTSKQLRFERK 555

Query: 328 -------GSAGDNVLRLGADHPSENLTLLETGELVYSPTLQEGPIMTAELIKETEELVLR 380
                    +  + +R G+  P   + LL++ + +++P  Q+ P+MT ++ +E  + V  
Sbjct: 556 TERTNSVNQSPTDAIRRGSAGPVGTMMLLKSRQQLHAPFTQDPPLMTEDMHEERLQAVEA 615

Query: 381 TGSVGAGCSQL-----LSDMQAFKAANPGCVLEDFIRWHSPPDW-------SEDCXXXXX 428
            G       QL     LSDM AFKAANP  V EDFIRWHSP DW       +E       
Sbjct: 616 FGDSLNVPGQLEKDILLSDMSAFKAANPDAVFEDFIRWHSPGDWESFEPKTTEPSAGPST 675

Query: 429 XXXXXXXXXXXXXXXMQTKEGNLWKELWGAAKPIPAVEQAPIYDEDLAVESIFDALEVIE 488
                            + +GNLW++ W  A  +PA +Q P+ D +   E I   LE + 
Sbjct: 676 EGSKDEWPPRGRLSQRMSDQGNLWRKSWNDAPALPADDQKPLLDPNREGEKIVHYLETVR 735

Query: 489 PSKLFEQLLAVIL-----SVCFVAAELVLPAGSNLSKLFYDCKDYILSIYQDDI-----S 538
           P +L EQ++         ++       +    S L +L+   K  + ++ ++++     +
Sbjct: 736 PHQLLEQMVCTAFRGSADTLNQTNVGNMRQMTSKLEQLYLIMKFTLGALQRNNLPDKAKT 795

Query: 539 KEKLDEICKVYETMEAIV 556
            + L  +C V+E +E +V
Sbjct: 796 VKDLKRLCMVFENVEKLV 813



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,236,708
Number of extensions: 541943
Number of successful extensions: 1197
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1192
Number of HSP's successfully gapped: 3
Length of query: 666
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 561
Effective length of database: 8,227,889
Effective search space: 4615845729
Effective search space used: 4615845729
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 115 (48.9 bits)