BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0507200 Os07g0507200|AK102722
         (177 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0507200  Targeting for Xklp2 family protein                  272   7e-74
Os03g0212600  Targeting for Xklp2 family protein                   87   5e-18

>Os07g0507200 Targeting for Xklp2 family protein
          Length = 177

 Score =  272 bits (696), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 145/177 (81%), Positives = 145/177 (81%)

Query: 1   HFLSLQIXXXXXXXXCTRPEGFQLESLVXXXXXXXXXXXXXXXXXXXXXXXXVVKAHPIM 60
           HFLSLQI        CTRPEGFQLESLV                        VVKAHPIM
Sbjct: 1   HFLSLQIPPKPEPKPCTRPEGFQLESLVRHEMEQQRIMEERERMEREEAQRRVVKAHPIM 60

Query: 61  KEDPIPLPEKERKPLTEVQPLKLHVDERAVQRSEFDNMVKEKEITYKRLREENEFAQKIE 120
           KEDPIPLPEKERKPLTEVQPLKLHVDERAVQRSEFDNMVKEKEITYKRLREENEFAQKIE
Sbjct: 61  KEDPIPLPEKERKPLTEVQPLKLHVDERAVQRSEFDNMVKEKEITYKRLREENEFAQKIE 120

Query: 121 EEKALKQLRRTLVPQARPLPKFDRPFRPQRSTKQVTRPKSPQLQVDQRGARRHAFIR 177
           EEKALKQLRRTLVPQARPLPKFDRPFRPQRSTKQVTRPKSPQLQVDQRGARRHAFIR
Sbjct: 121 EEKALKQLRRTLVPQARPLPKFDRPFRPQRSTKQVTRPKSPQLQVDQRGARRHAFIR 177



>Os03g0212600 Targeting for Xklp2 family protein
          Length = 316

 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 70/111 (63%)

Query: 53  VVKAHPIMKEDPIPLPEKERKPLTEVQPLKLHVDERAVQRSEFDNMVKEKEITYKRLREE 112
           + +  P   ++P  L +   K  TE   L LH D RA++R+EFD  V E+    ++LR E
Sbjct: 162 IAQGLPWTTDEPECLIKPPVKETTEPVDLVLHSDVRAIERAEFDQYVSERNKFAEQLRLE 221

Query: 113 NEFAQKIEEEKALKQLRRTLVPQARPLPKFDRPFRPQRSTKQVTRPKSPQL 163
            E  QK+EEE+ +KQLR+ LVP+A+P+P FDRPF P+RS K  T PK P+ 
Sbjct: 222 RERQQKLEEEEMIKQLRKELVPKAQPMPYFDRPFIPKRSAKPATVPKEPKF 272



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,825,445
Number of extensions: 185646
Number of successful extensions: 983
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 981
Number of HSP's successfully gapped: 2
Length of query: 177
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 83
Effective length of database: 12,127,685
Effective search space: 1006597855
Effective search space used: 1006597855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)