Os03g0212600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Targeting for Xklp2 family protein.
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Os03g0212600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Targeting for Xklp2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188.38 | 0.645 | 2.51 | 0.962 | 0.258 | -46.8 | 0.0363 | 121 | 0.216 | 4.96 | 46 | 399 | -- | -- |
| 211.36 | 0.682 | 2.97 | 0.00863 | 0.178 | -0.196 | -0.629 | -- | 0.202 | 4.85 | 46 | 399 | -- | -- |
| 187.66 | 0.638 | 2.48 | 1.07 | 0.246 | -47.1 | -- | 122 | 0.208 | 5.21 | 44.41 | 397 | -- | -- |
| 191.41 | 0.644 | 2.95 | -0.194 | 0.232 | 2.57 | -- | -- | 0.213 | 6.03 | 46.01 | 415 | -- | -- |
| 190.71 | 0.643 | 2.45 | 1.18 | -- | -46.8 | -- | 121 | 0.217 | -- | 44 | 397 | -- | -- |
| 211.47 | 0.682 | 2.97 | 0.000648 | 0.18 | -- | -0.616 | -- | 0.203 | 4.86 | -- | -- | -- | -- |
| 212.43 | 0.683 | 2.96 | 0.00241 | 0.175 | -- | -- | -- | 0.206 | 4.45 | -- | -- | -- | -- |
| 194.34 | 0.649 | 2.96 | -0.152 | -- | 2.49 | -- | -- | 0.224 | -- | 46 | 415 | -- | -- |
| 191.6 | 0.645 | 2.95 | -- | 0.253 | 2.54 | -- | -- | 0.239 | 4.72 | 46 | 415 | -- | -- |
| 214.08 | 0.684 | 2.97 | 0.00927 | -- | -- | -- | -- | 0.211 | -- | -- | -- | -- | -- |
| 212.43 | 0.682 | 2.96 | -- | 0.176 | -- | -- | -- | 0.206 | 4.45 | -- | -- | -- | -- |
| 194.93 | 0.65 | 2.96 | -- | -- | 2.42 | -- | -- | 0.247 | -- | 46 | 415 | -- | -- |
| 214.08 | 0.683 | 2.97 | -- | -- | -- | -- | -- | 0.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 184.98 | humidity | 50 | 10 | < th | dose independent | rect. | 15 | 1 |
| 2 | 184.98 | humidity | 50 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 29 | 185.36 | wind | 1 | 30 | < th | dose independent | rect. | 15 | 1 |
| 31 | 185.36 | wind | 1 | 30 | < th | dose dependent | rect. | 15 | 1 |
| 213 | 186.33 | humidity | 50 | 90 | < th | dose dependent | sin | 12 | NA |
| 214 | 187.19 | humidity | 50 | 90 | < th | dose independent | sin | 12 | NA |
| 220 | 188.78 | humidity | 50 | 90 | > th | dose independent | sin | 12 | NA |
| 225 | 189.74 | temperature | 20 | 10 | < th | dose dependent | rect. | 22 | 1 |
| 228 | 190.30 | temperature | 20 | 90 | < th | dose independent | rect. | 20 | 1 |
| 242 | 190.51 | wind | 3 | 90 | < th | dose dependent | rect. | 14 | 6 |
| 316 | 192.89 | temperature | 30 | 90 | > th | dose independent | rect. | 15 | 1 |
| 438 | 194.60 | humidity | 50 | 270 | < th | dose independent | rect. | 12 | 6 |
| 548 | 195.37 | wind | 3 | 90 | < th | dose dependent | rect. | 20 | 1 |
| 610 | 195.77 | wind | 3 | 90 | < th | dose independent | rect. | 14 | 6 |
| 803 | 196.69 | humidity | 50 | 270 | < th | dose dependent | no | NA | NA |
| 935 | 196.98 | temperature | 30 | 90 | > th | dose independent | sin | 14 | NA |
| 996 | 197.50 | humidity | 50 | 270 | < th | dose independent | no | NA | NA |