BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0212600 Os03g0212600|AK064500
(316 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01015.1 | chr3:1798-4017 REVERSE LENGTH=489 219 2e-57
AT5G15510.2 | chr5:5034120-5036588 FORWARD LENGTH=520 208 3e-54
AT5G37478.1 | chr5:14881560-14883799 FORWARD LENGTH=179 85 4e-17
AT1G03780.3 | chr1:947555-951696 REVERSE LENGTH=791 69 2e-12
AT5G44270.1 | chr5:17833636-17835740 FORWARD LENGTH=310 55 4e-08
>AT3G01015.1 | chr3:1798-4017 REVERSE LENGTH=489
Length = 488
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 184/327 (56%), Gaps = 39/327 (11%)
Query: 1 MTKALSSVPDSGAGRVKHLVQAFESI----LSISGATSDADRAGEG-SWALPGLQAWKED 55
+ +A S+P+ G+V HLV+AFE + LS + + D+ + W LPG+
Sbjct: 173 LEEARMSIPE--FGKVMHLVKAFEKLTCFPLSKVTSKEEEDQIKQPLKWELPGM------ 224
Query: 56 CEGKIGMPPVSVSSSAEFLNAGPNRLCSSLDGKSDRLSWD---------------SRTSA 100
P S S + +F + S L + L + S S
Sbjct: 225 -----SQPKCSESETDQFTWSSSFYPSSGLILTATNLGLEQPHASVSSSWDNSVSSLNSN 279
Query: 101 GGCRSRRNTSESL-----RSSWNKKLKVTSQHPFKLRTEQRGRVKEQQFIQKVQEMLMEE 155
GG R RRN+ ES R S K++KVTS PFKLRTE+RGR+KE++F +K+ EM +E+
Sbjct: 280 GGRRGRRNSFESSASMGSRRSTKKQIKVTSLKPFKLRTEERGRMKEEEFAKKLHEMTLEK 339
Query: 156 EQQRIHIAQGLPWTTDEPECLIKPPVKETTEPVDLVLHSDVRAIERAEFDQYVSERNKFA 215
++RI IAQGLPWTTDEPE L+KP VK+ T PVDL LHSD+RA+ERAEFD V+E+
Sbjct: 340 AKKRIPIAQGLPWTTDEPENLVKPHVKDITIPVDLKLHSDIRAVERAEFDYQVTEKINLV 399
Query: 216 XXXXXXXXXXXXXXXXXMIKQLRKELVPKAQPMPYFDRPFIPKRSAKPATVPKEPKFH-P 274
I++LRKELVPKAQPMPYFDRPFIPKRS K TVP++PKF+ P
Sbjct: 400 EQYKTERERQQKLAEEEEIRRLRKELVPKAQPMPYFDRPFIPKRSNKHPTVPRDPKFNIP 459
Query: 275 RPEKQSCLCRQRCMDTGMLISSCLHDQ 301
+ +K C DTG +S L+ Q
Sbjct: 460 QHKKIRCCSTSSWSDTGSYMSDLLYQQ 486
>AT5G15510.2 | chr5:5034120-5036588 FORWARD LENGTH=520
Length = 519
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 130/270 (48%), Positives = 162/270 (60%), Gaps = 19/270 (7%)
Query: 4 ALSSVPDSGAGRVKHLVQAFESILSISGATSDADRAGEGSW--------ALPGLQAWKED 55
A SVP SG +V +LV+AFE + S + + A++ E L L+ KE
Sbjct: 189 ARQSVPVSG--KVMNLVEAFEKLTCFSNSKT-ANKIEENQTEEDTKKPVKLEFLEGEKEK 245
Query: 56 CEGKIGMPPVSVSSSAEFLNAGPN-RLCSSLDGKSDRLSWDSRTSAGGCRSRRNTSESL- 113
P + +A+ L PN + SS D S R S S +S G RSRRN+ ES
Sbjct: 246 NPWSSSFCPSEMVLTAKNLGLDPNASISSSWD--STRGSVLSGSSNAGRRSRRNSMESST 303
Query: 114 ----RSSWNKKLKVTSQHPFKLRTEQRGRVKEQQFIQKVQEMLMEEEQQRIHIAQGLPWT 169
R S K++KVTS PFKLRTEQRG+VKE++ +K+ E+ MEEE+ RI IAQGLPWT
Sbjct: 304 TMGSRRSKKKQVKVTSLKPFKLRTEQRGKVKEEELAKKIHEITMEEEKMRIPIAQGLPWT 363
Query: 170 TDEPECLIKPPVKETTEPVDLVLHSDVRAIERAEFDQYVSERNKFAXXXXXXXXXXXXXX 229
TDEPECL+KP K+ T PVDL LHSDVRA+ERAEFD V+E+ F
Sbjct: 364 TDEPECLVKPHWKDITRPVDLTLHSDVRAVERAEFDYQVAEKMSFIEQYKMERERQQKLA 423
Query: 230 XXXMIKQLRKELVPKAQPMPYFDRPFIPKR 259
I++LRKELVPKAQPMPYFDRPFIP+R
Sbjct: 424 EEEEIRRLRKELVPKAQPMPYFDRPFIPRR 453
>AT5G37478.1 | chr5:14881560-14883799 FORWARD LENGTH=179
Length = 178
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 57/97 (58%)
Query: 176 LIKPPVKETTEPVDLVLHSDVRAIERAEFDQYVSERNKFAXXXXXXXXXXXXXXXXXMIK 235
+ K P KE +P++ LHS RA++RA F+ V+ I+
Sbjct: 56 ITKAPAKENKKPLEFKLHSGERAVKRAMFNYSVATNYYIQKLQKKQEERLQKMIEEEEIR 115
Query: 236 QLRKELVPKAQPMPYFDRPFIPKRSAKPATVPKEPKF 272
LRKE+VPKAQ MP+FDRPF+P+RS++P T+PKEP F
Sbjct: 116 MLRKEMVPKAQLMPFFDRPFLPQRSSRPLTMPKEPSF 152
>AT1G03780.3 | chr1:947555-951696 REVERSE LENGTH=791
Length = 790
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 93/222 (41%), Gaps = 61/222 (27%)
Query: 124 TSQHPFKLRTEQRGRVKEQQFIQKVQEMLMEEEQQRIHIAQGLPWTTD------------ 171
T+ +PF L+TE+RG KE++F ++ + + + R+ A P+TTD
Sbjct: 522 TAPNPFNLKTEERGAEKEKKFYMELMYKKLGDVKARVPKANPYPYTTDYPVVPPKPEPKQ 581
Query: 172 ----EP---ECLIK----------------------------PPVKETTEPV-------- 188
EP E L++ P +KE PV
Sbjct: 582 CTQPEPFQLESLVRHEEEMRREREERRRMETEEAQKRLFKAQPVIKEDPIPVPEKVRMPL 641
Query: 189 ----DLVLHSDVRAIERAEFDQYVSERNKFAXXXXXXXXXXXXXXXXXMIKQLRKELVPK 244
+ LH + RA+ERA+FD + E+ +KQ+RK +VP
Sbjct: 642 TEIQEFNLHVEHRAVERADFDHKIKEKENQYKRYREESEAAKMVEEERALKQMRKTMVPH 701
Query: 245 AQPMPYFDRPFIPKRSAKPATVPKEPKFH--PRPEKQSCLCR 284
A+P+P F++PF+P++S K T K P R E+++ + R
Sbjct: 702 ARPVPNFNKPFLPQKSNKGTTKAKSPNLRVIKRTERRTMMAR 743
>AT5G44270.1 | chr5:17833636-17835740 FORWARD LENGTH=310
Length = 309
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 192 LHSDVRAIERAEFDQYVSERNKFAXXXXXXXXXXXXXXXXXMIKQLRKELVPKAQPMPYF 251
LH D R IERA+FD + E+ +KQLR+ +VP+ +P+
Sbjct: 210 LHVDHRPIERADFDHKIKEKEMMYKRHLEEAEAAKMVEEERALKQLRRTIVPQTRPVSNL 269
Query: 252 DRPFIPKRSAKPATVPKEPKF 272
+ PF+P +S K T P PK
Sbjct: 270 NNPFLPHKSNKETTKPNSPKL 290
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.130 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,838,222
Number of extensions: 280938
Number of successful extensions: 987
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 978
Number of HSP's successfully gapped: 6
Length of query: 316
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 217
Effective length of database: 8,392,385
Effective search space: 1821147545
Effective search space used: 1821147545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)