BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0504700 Os07g0504700|Os07g0504700
(139 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0504700 237 2e-63
Os08g0396100 Conserved hypothetical protein 82 1e-16
Os02g0300301 Conserved hypothetical protein 79 1e-15
Os05g0249800 79 1e-15
Os10g0385550 Conserved hypothetical protein 77 3e-15
Os03g0809400 Conserved hypothetical protein 70 7e-13
>Os07g0504700
Length = 139
Score = 237 bits (604), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/139 (86%), Positives = 120/139 (86%)
Query: 1 MACGGSVAAHAIISFPFHTLPSMPIIFSLDTNSFHPLQXXXXXXXXXXXXXXXXXXXGGI 60
MACGGSVAAHAIISFPFHTLPSMPIIFSLDTNSFHPLQ GGI
Sbjct: 1 MACGGSVAAHAIISFPFHTLPSMPIIFSLDTNSFHPLQRRERRRAHESSRARSKRRRGGI 60
Query: 61 VAVAIDLDQVGPSRRAIVFASYSSPFPLKNHEEWSSEEGDRPHLPQHLPLTSIFDSSRSG 120
VAVAIDLDQVGPSRRAIVFASYSSPFPLKNHEEWSSEEGDRPHLPQHLPLTSIFDSSRSG
Sbjct: 61 VAVAIDLDQVGPSRRAIVFASYSSPFPLKNHEEWSSEEGDRPHLPQHLPLTSIFDSSRSG 120
Query: 121 ELHLDSSHLHHPRDFTNIK 139
ELHLDSSHLHHPRDFTNIK
Sbjct: 121 ELHLDSSHLHHPRDFTNIK 139
>Os08g0396100 Conserved hypothetical protein
Length = 161
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 63/118 (53%)
Query: 15 FPFHTLPSMPIIFSLDTNSFHPLQXXXXXXXXXXXXXXXXXXXGGIVAVAIDLDQVGPSR 74
FPF L MP F DT SFHPLQ +VAV ++++ SR
Sbjct: 43 FPFRILIFMPNKFPFDTISFHPLQRRERHRAHGSSRARPERRRHDLVAVPASVERIRSSR 102
Query: 75 RAIVFASYSSPFPLKNHEEWSSEEGDRPHLPQHLPLTSIFDSSRSGELHLDSSHLHHP 132
RA +F S SSP LKN ++ S+EE DR L Q P +SIFDSS SGEL +DS H P
Sbjct: 103 RANIFPSRSSPNALKNPQDLSTEERDRAILLQLRPPSSIFDSSFSGELQVDSMHFLGP 160
>Os02g0300301 Conserved hypothetical protein
Length = 166
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 49/79 (62%)
Query: 59 GIVAVAIDLDQVGPSRRAIVFASYSSPFPLKNHEEWSSEEGDRPHLPQHLPLTSIFDSSR 118
IVAVAI+LDQ G S A F S SSPFPLKN EEW E GDRP +I DS+
Sbjct: 37 NIVAVAINLDQAGASHHATSFTSTSSPFPLKNLEEWCYECGDRPPSSPPPVAVAIVDSAS 96
Query: 119 SGELHLDSSHLHHPRDFTN 137
SGE DSS +HHP D TN
Sbjct: 97 SGEPLSDSSRIHHPWDLTN 115
>Os05g0249800
Length = 166
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 49/78 (62%)
Query: 60 IVAVAIDLDQVGPSRRAIVFASYSSPFPLKNHEEWSSEEGDRPHLPQHLPLTSIFDSSRS 119
IVAVAI+LDQ G S A F S SSPFPLKN EEW E GDRP +I DS+ S
Sbjct: 38 IVAVAINLDQAGASHHATSFTSTSSPFPLKNLEEWCYECGDRPPSSPPPVAVAIVDSASS 97
Query: 120 GELHLDSSHLHHPRDFTN 137
GE DSS +HHP D TN
Sbjct: 98 GEPLSDSSRIHHPWDLTN 115
>Os10g0385550 Conserved hypothetical protein
Length = 170
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 49/79 (62%)
Query: 59 GIVAVAIDLDQVGPSRRAIVFASYSSPFPLKNHEEWSSEEGDRPHLPQHLPLTSIFDSSR 118
IVAVAI+LDQ G S A F S SSPFPLKN +EW E GDRP +I DS+
Sbjct: 37 NIVAVAINLDQAGASHHATSFTSTSSPFPLKNLQEWCYECGDRPPSSPPPVAVAIVDSAS 96
Query: 119 SGELHLDSSHLHHPRDFTN 137
SGE DSS +HHP D TN
Sbjct: 97 SGEPLSDSSRIHHPWDLTN 115
>Os03g0809400 Conserved hypothetical protein
Length = 173
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 60 IVAVAIDLDQVGPSRRAIVFASYSSPFPLKNHEEWSSEEGDRPHLPQHLP--LTSIFDSS 117
I+AV LDQ GPS RA VFAS SSPF KN E W E GDR LP P +I D +
Sbjct: 47 IIAVPAYLDQAGPSCRASVFASTSSPFSFKNLEGWYYECGDR--LPSSSPPVAVAIVDFA 104
Query: 118 RSGELHLDSSHLHHPRDFTN 137
SGE DSS +HHP D TN
Sbjct: 105 SSGEPLSDSSRIHHPWDLTN 124
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,898,340
Number of extensions: 179685
Number of successful extensions: 388
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 6
Length of query: 139
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 49
Effective length of database: 12,336,541
Effective search space: 604490509
Effective search space used: 604490509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)