Os07g0504700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0504700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.25 | 0.558 | 8.15 | 2.02 | 1.84 | -1.27 | 1.1 | 2.39 | 1.18 | 4.98 | 26.01 | 874 | -- | -- |
| 146.05 | 0.563 | 8.14 | 2.37 | 1.9 | -1.57 | 1.18 | -- | 1.23 | 4.65 | 24.1 | 1856 | -- | -- |
| 143.13 | 0.557 | 8.16 | 2.04 | 1.95 | -1.27 | -- | 2.46 | 1.18 | 4.97 | 25.83 | 641 | -- | -- |
| 148.15 | 0.567 | 8.12 | 2.39 | 1.88 | -1.55 | -- | -- | 1.25 | 4.64 | 24.07 | 1843 | -- | -- |
| 313.68 | 0.825 | 8.21 | 1.92 | -- | -1.52 | -- | 1.8 | 1.12 | -- | 26.6 | 2675 | -- | -- |
| 180.05 | 0.629 | 8.03 | 2.89 | 1.86 | -- | 0.935 | -- | 1.6 | 4.59 | -- | -- | -- | -- |
| 182.37 | 0.632 | 8.04 | 2.88 | 1.86 | -- | -- | -- | 1.59 | 4.57 | -- | -- | -- | -- |
| 316.61 | 0.829 | 8.15 | 2.25 | -- | -1.7 | -- | -- | 1.2 | -- | 25.85 | 2671 | -- | -- |
| 160.01 | 0.589 | 8.24 | -- | 1.84 | -2.6 | -- | -- | 0.693 | 4.63 | 21.08 | 47520 | -- | -- |
| 366.91 | 0.895 | 8.05 | 2.96 | -- | -- | -- | -- | 1.64 | -- | -- | -- | -- | -- |
| 401.53 | 0.937 | 8.11 | -- | 1.91 | -- | -- | -- | 1.27 | 4.53 | -- | -- | -- | -- |
| 340.06 | 0.859 | 8.26 | -- | -- | -2.67 | -- | -- | 0.703 | -- | 21.36 | 47520 | -- | -- |
| 597.31 | 1.14 | 8.13 | -- | -- | -- | -- | -- | 1.31 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 134.01 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 17 | 135.00 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 14 |
| 19 | 135.10 | temperature | 25.0 | 720 | < th | dose dependent | sin | 16 | NA |
| 74 | 137.33 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 97 | 137.78 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 10 |
| 130 | 138.39 | temperature | 10.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 148 | 138.63 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 162 | 138.73 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 23 | 12 |
| 173 | 138.79 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 183 | 138.90 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 194 | 139.01 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 17 | 16 |
| 207 | 139.07 | temperature | 15.0 | 4320 | < th | dose dependent | sin | 5 | NA |
| 210 | 139.07 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 19 | 14 |
| 225 | 139.15 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 16 | 19 |
| 227 | 139.18 | temperature | 20.0 | 270 | < th | dose dependent | sin | 10 | NA |
| 231 | 139.20 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 23 | 11 |
| 235 | 139.21 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 23 | 8 |
| 240 | 139.22 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 24 | 18 |
| 254 | 139.29 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 24 | 15 |
| 314 | 139.58 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 317 | 139.59 | wind | 3.0 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 319 | 139.62 | wind | 3.0 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 324 | 139.64 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 363 | 139.79 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 364 | 139.79 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 369 | 139.80 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 370 | 139.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 376 | 139.83 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 428 | 140.10 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 457 | 140.21 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 18 | 2 |
| 485 | 140.31 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 515 | 140.44 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 578 | 140.67 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 587 | 140.70 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 7 | 8 |
| 594 | 140.73 | humidity | 60.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 617 | 140.81 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 8 | 13 |
| 640 | 140.88 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 653 | 140.91 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 655 | 140.91 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 681 | 141.00 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 20 | 15 |
| 688 | 141.02 | wind | 9.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 713 | 141.09 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 20 | 15 |
| 722 | 141.11 | humidity | 60.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 746 | 141.16 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 839 | 141.31 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 21 | NA |
| 840 | 141.31 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 843 | 141.32 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 23 | 12 |
| 910 | 141.41 | wind | 5.0 | 14400 | > th | dose independent | rect. | 2 | 14 |
| 927 | 141.45 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 952 | 141.49 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 978 | 141.54 | wind | 5.0 | 14400 | > th | dose independent | rect. | 24 | 16 |