BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0495200 Os07g0495200|AK070990
         (205 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0495200  Similar to ATP synthase delta\' chain, mitocho...   328   2e-90
Os07g0495400  Similar to ATP synthase delta\' chain, mitocho...   103   8e-23

>Os07g0495200 Similar to ATP synthase delta\' chain, mitochondrial precursor (EC
           3.6.3.14)
          Length = 205

 Score =  328 bits (840), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 165/177 (93%), Positives = 165/177 (93%)

Query: 29  EVPXXXXXXXXXXXXWKKVAPNIEAPATPMSLMQPRPPTPAAIPSKLTVNFVLPYKSEIA 88
           EVP            WKKVAPNIEAPATPMSLMQPRPPTPAAIPSKLTVNFVLPYKSEIA
Sbjct: 29  EVPAEAATDSAFAEAWKKVAPNIEAPATPMSLMQPRPPTPAAIPSKLTVNFVLPYKSEIA 88

Query: 89  NKEVDMVIVPATTGQMGVLPGHVSTIAELKPGVLSVHEGNDITKYFVSSGFAFVHANSIA 148
           NKEVDMVIVPATTGQMGVLPGHVSTIAELKPGVLSVHEGNDITKYFVSSGFAFVHANSIA
Sbjct: 89  NKEVDMVIVPATTGQMGVLPGHVSTIAELKPGVLSVHEGNDITKYFVSSGFAFVHANSIA 148

Query: 149 DIVAVEAVPLDQIDPAAVQQGLAEFNAKLGSASTELEKAEAQIGVDVHSALNAALAG 205
           DIVAVEAVPLDQIDPAAVQQGLAEFNAKLGSASTELEKAEAQIGVDVHSALNAALAG
Sbjct: 149 DIVAVEAVPLDQIDPAAVQQGLAEFNAKLGSASTELEKAEAQIGVDVHSALNAALAG 205



>Os07g0495400 Similar to ATP synthase delta\' chain, mitochondrial precursor
          (EC 3.6.3.14)
          Length = 96

 Score =  103 bits (257), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 51/63 (80%), Positives = 51/63 (80%)

Query: 29 EVPXXXXXXXXXXXXWKKVAPNIEAPATPMSLMQPRPPTPAAIPSKLTVNFVLPYKSEIA 88
          EVP            WKKVAPNIEAPATPMSLMQPRPPTPAAIPSKLTVNFVLPYKSEIA
Sbjct: 31 EVPAEAATDSAFAEAWKKVAPNIEAPATPMSLMQPRPPTPAAIPSKLTVNFVLPYKSEIA 90

Query: 89 NKE 91
          NKE
Sbjct: 91 NKE 93



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,598,776
Number of extensions: 233538
Number of successful extensions: 1040
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1040
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 109
Effective length of database: 12,023,257
Effective search space: 1310535013
Effective search space used: 1310535013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 153 (63.5 bits)