Os07g0495200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ATP synthase delta' chain, mitochondrial precursor (EC 3.6.3.14).
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Os07g0495200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ATP synthase delta' chain, mitochondrial precursor (EC 3.6.3.14).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.5 | 0.207 | 11.3 | -0.313 | 0.254 | 0.358 | 0.403 | 1.31 | -0.245 | 10.7 | 16.64 | 5083 | -- | -- |
| 21.07 | 0.214 | 11.3 | -0.378 | 0.256 | 0.401 | 0.297 | -- | -0.241 | 10.8 | 20.1 | 5010 | -- | -- |
| 20.09 | 0.209 | 11.3 | -0.301 | 0.245 | 0.365 | -- | 1.32 | -0.242 | 10.5 | 16.99 | 4993 | -- | -- |
| 21.48 | 0.216 | 11.3 | -0.378 | 0.256 | 0.4 | -- | -- | -0.241 | 10.4 | 20.15 | 5050 | -- | -- |
| 22.52 | 0.221 | 11.3 | -0.331 | -- | 0.396 | -- | 1.29 | -0.247 | -- | 16.62 | 4604 | -- | -- |
| 23.85 | 0.229 | 11.3 | -0.41 | 0.22 | -- | 0.356 | -- | -0.203 | 11.7 | -- | -- | -- | -- |
| 24.39 | 0.231 | 11.3 | -0.397 | 0.219 | -- | -- | -- | -0.202 | 11.4 | -- | -- | -- | -- |
| 24.15 | 0.229 | 11.3 | -0.372 | -- | 0.413 | -- | -- | -0.267 | -- | 16.19 | 4594 | -- | -- |
| 25.32 | 0.234 | 11.3 | -- | 0.216 | 0.334 | -- | -- | -0.242 | 10 | 19.97 | 9341 | -- | -- |
| 27.41 | 0.245 | 11.3 | -0.402 | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
| 28.53 | 0.25 | 11.3 | -- | 0.224 | -- | -- | -- | -0.158 | 11.5 | -- | -- | -- | -- |
| 27.33 | 0.243 | 11.3 | -- | -- | 0.426 | -- | -- | -0.226 | -- | 19.93 | 4596 | -- | -- |
| 31.67 | 0.263 | 11.3 | -- | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.82 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 2 | 17.83 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 4 | 17.84 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 19 | 17.87 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 22 | 17.88 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 24 | 17.88 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 25 | 17.88 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 29 | 17.93 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 145 | 19.04 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 3 |
| 165 | 19.13 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 174 | 19.23 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 177 | 19.24 | temperature | 30 | 14400 | > th | dose independent | sin | 9 | NA |
| 178 | 19.24 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 3 |
| 198 | 19.26 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 214 | 19.27 | temperature | 30 | 14400 | > th | dose dependent | sin | 8 | NA |
| 216 | 19.28 | temperature | 30 | 14400 | < th | dose independent | sin | 9 | NA |
| 250 | 19.35 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 273 | 19.37 | wind | 7 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 352 | 19.46 | wind | 1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 354 | 19.47 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 380 | 19.48 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 454 | 19.50 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 549 | 19.54 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 571 | 19.55 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 16 |
| 638 | 19.59 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 639 | 19.59 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 865 | 19.61 | radiation | 40 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 869 | 19.62 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 898 | 19.64 | humidity | 80 | 14400 | < th | dose independent | rect. | 13 | 16 |
| 941 | 19.66 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 996 | 19.69 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |