BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0484300 Os07g0484300|AK072721
         (570 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0484300  Zinc finger, RING-type domain containing protein    952   0.0  
Os06g0301000  Zinc finger, RING-type domain containing protein    102   5e-22

>Os07g0484300 Zinc finger, RING-type domain containing protein
          Length = 570

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/570 (83%), Positives = 475/570 (83%)

Query: 1   MAAVNSLYVXXXXXXXXXXXLQWWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHVTVAL 60
           MAAVNSLYV           LQWW                             SHVTVAL
Sbjct: 1   MAAVNSLYVAAASTAASAAALQWWAGSLLDGDADAAGGGGGGGGGDWLGTVLGSHVTVAL 60

Query: 61  LANLAAHVFLVLILSLKTLFFVQLTSSETRKVLEHIINYVLYKGTFLPLVVPPNSQQIIX 120
           LANLAAHVFLVLILSLKTLFFVQLTSSETRKVLEHIINYVLYKGTFLPLVVPPNSQQII 
Sbjct: 61  LANLAAHVFLVLILSLKTLFFVQLTSSETRKVLEHIINYVLYKGTFLPLVVPPNSQQIIL 120

Query: 121 XXXXXXXXXXXKMFQSLARERLEQLNASPSATPSKYFRVYXXXXXXXXXXXXWIKLCVGF 180
                      KMFQSLARERLEQLNASPSATPSKYFRVY            WIKLCVGF
Sbjct: 121 WSSWLGLLCSLKMFQSLARERLEQLNASPSATPSKYFRVYSALLLVLSADVLWIKLCVGF 180

Query: 181 CKSCNSQLFWLMFFEPLSIGFETLQSIMVHGFQLFDIWQRHQMDSGVDYLDFQKTYKQAA 240
           CKSCNSQLFWLMFFEPLSIGFETLQSIMVHGFQLFDIWQRHQMDSGVDYLDFQKTYKQAA
Sbjct: 181 CKSCNSQLFWLMFFEPLSIGFETLQSIMVHGFQLFDIWQRHQMDSGVDYLDFQKTYKQAA 240

Query: 241 GSFSEWRGRLVRNFGFVIDLISLLMSLGHYSMIFWLRGMAFHLVDAVLLLNLRALIASFW 300
           GSFSEWRGRLVRNFGFVIDLISLLMSLGHYSMIFWLRGMAFHLVDAVLLLNLRALIASFW
Sbjct: 241 GSFSEWRGRLVRNFGFVIDLISLLMSLGHYSMIFWLRGMAFHLVDAVLLLNLRALIASFW 300

Query: 301 KRIKTYAKLRKALSSLDGALPDATYDEICAYDDECAICRGPMARAKKLSCNHLFHLACLR 360
           KRIKTYAKLRKALSSLDGALPDATYDEICAYDDECAICRGPMARAKKLSCNHLFHLACLR
Sbjct: 301 KRIKTYAKLRKALSSLDGALPDATYDEICAYDDECAICRGPMARAKKLSCNHLFHLACLR 360

Query: 361 SWLDQGLMDGYSCPTCRRPLFLSSQGHTRSTAEVGNVQLIAEQLNAGLNQQRVPGHEHPI 420
           SWLDQGLMDGYSCPTCRRPLFLSSQGHTRSTAEVGNVQLIAEQLNAGLNQQRVPGHEHPI
Sbjct: 361 SWLDQGLMDGYSCPTCRRPLFLSSQGHTRSTAEVGNVQLIAEQLNAGLNQQRVPGHEHPI 420

Query: 421 EHQNPADAVWRGAGLDSSWAPPWXXXXXXXXXXXXXXXXXXXXXXQMMMRQLTSVTDNYG 480
           EHQNPADAVWRGAGLDSSWAPPW                      QMMMRQLTSVTDNYG
Sbjct: 421 EHQNPADAVWRGAGLDSSWAPPWSSPGMDNPSSSSAVTSVGLSGVQMMMRQLTSVTDNYG 480

Query: 481 HPDATWSLWPEPVAGXXXXXXXXXRPDGASAAGLRFRGTARPANGSMSEVLSMVDRVREV 540
           HPDATWSLWPEPVAG         RPDGASAAGLRFRGTARPANGSMSEVLSMVDRVREV
Sbjct: 481 HPDATWSLWPEPVAGSSVVPSSSSRPDGASAAGLRFRGTARPANGSMSEVLSMVDRVREV 540

Query: 541 LPHIPDELIIEDLMRTNNINATVNNLLLMQ 570
           LPHIPDELIIEDLMRTNNINATVNNLLLMQ
Sbjct: 541 LPHIPDELIIEDLMRTNNINATVNNLLLMQ 570



>Os06g0301000 Zinc finger, RING-type domain containing protein
          Length = 500

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 80/144 (55%), Gaps = 7/144 (4%)

Query: 245 EWRGRLVRNFGFVIDLISLLMSLGHYSMIFWLRGMAFHLVDAVLLLNLRALIASFWKRIK 304
           +W  + V  + F ++LIS L+ L  Y M+F++     + V   L+  L     +F  RI 
Sbjct: 205 QWEKKAV--YTFYLELISDLVHLSLY-MLFFIAIFLNYGVPLHLIRELYETFRNFRIRIA 261

Query: 305 TYAKLRKALSSLDGALPDATYDEICAYDDECAICRGPMARAKKLSCNHLFHLACLRSWLD 364
            Y + RK  S+++   PDAT DE+ A D  C ICR  M  AKKL C HLFH+ CLRSWL+
Sbjct: 262 DYVRYRKITSNMNERFPDATADELNASDATCIICREEMTTAKKLLCGHLFHVHCLRSWLE 321

Query: 365 QGLMDGYSCPTCRRPLFLSSQGHT 388
           +     ++CPTCR P+     G T
Sbjct: 322 R----QHTCPTCRAPILPPDNGRT 341



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,950,857
Number of extensions: 568045
Number of successful extensions: 2271
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2270
Number of HSP's successfully gapped: 2
Length of query: 570
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 464
Effective length of database: 11,501,117
Effective search space: 5336518288
Effective search space used: 5336518288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 159 (65.9 bits)