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Os07g0484300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.012) R2 : 0.0291
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0938 (0.0253) R2dN8 : 0.0376 R2N8 : 0.0291
σ : 0.227
deviance : 23.59
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.7 0.192 11.3 -0.296 0.15 -0.0437 -0.422 0.95 0.0732 12.3 41.7 719 -- --
17.58 0.197 11.3 -0.356 0.167 -0.184 -0.452 -- 0.0526 11.5 40.68 1428 -- --
17.21 0.193 11.3 -0.315 0.139 -0.0526 -- 1.13 0.0728 12.8 44.29 875 -- --
18.27 0.2 11.3 -0.372 0.177 -0.178 -- -- 0.0524 12.8 40.68 1428 -- --
18.46 0.2 11.3 -0.331 -- -0.0581 -- 1.13 0.0619 -- 44.42 916 -- --
17.92 0.198 11.3 -0.348 0.13 -- -0.477 -- 0.0553 11 -- -- -- --
18.61 0.202 11.3 -0.365 0.148 -- -- -- 0.0555 12.9 -- -- -- --
19.55 0.206 11.3 -0.375 -- -0.115 -- -- 0.0673 -- 45.82 1195 -- --
21.78 0.217 11.3 -- 0.149 -0.101 -- -- 0.113 13 38.58 1451 -- --
19.97 0.209 11.3 -0.37 -- -- -- -- 0.0527 -- -- -- -- --
22.12 0.22 11.3 -- 0.154 -- -- -- 0.0961 13 -- -- -- --
23.02 0.223 11.3 -- -- -0.129 -- -- 0.109 -- 39.18 1202 -- --
23.59 0.227 11.3 -- -- -- -- -- 0.0938 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.93 humidity 50.0 90 > th dose dependent rect. 11 6
2 16.01 radiation 40.0 90 < th dose independent rect. 10 7
4 16.03 temperature 10.0 43200 > th dose independent rect. 8 11
5 16.04 radiation 40.0 10 < th dose independent rect. 11 6
10 16.06 temperature 10.0 43200 > th dose independent rect. 12 8
12 16.06 humidity 50.0 10 > th dose dependent rect. 11 6
14 16.09 humidity 50.0 270 > th dose dependent rect. 11 2
20 16.13 humidity 60.0 90 > th dose independent rect. 1 15
24 16.15 radiation 40.0 270 < th dose independent rect. 23 14
25 16.15 humidity 60.0 270 > th dose independent rect. 23 15
28 16.16 radiation 40.0 90 < th dose dependent rect. 10 7
29 16.17 humidity 60.0 90 > th dose independent rect. 3 13
43 16.22 radiation 40.0 90 < th dose independent rect. 7 10
47 16.23 radiation 30.0 720 > th dose independent rect. 15 17
48 16.23 temperature 30.0 270 < th dose independent rect. 15 19
50 16.24 radiation 40.0 90 < th dose independent rect. 1 14
54 16.24 radiation 40.0 10 < th dose independent rect. 11 18
56 16.25 humidity 60.0 90 > th dose independent rect. 10 7
69 16.27 radiation 40.0 1440 < th dose independent rect. 19 13
70 16.27 humidity 60.0 10 > th dose independent rect. 3 14
82 16.28 humidity 50.0 270 > th dose dependent rect. 23 15
107 16.32 radiation 40.0 720 < th dose independent rect. 3 9
108 16.32 humidity 60.0 90 > th dose independent rect. 7 10
109 16.32 radiation 40.0 90 < th dose independent rect. 3 13
113 16.32 humidity 60.0 10 > th dose independent rect. 24 17
115 16.32 atmosphere 1000.0 270 > th dose independent rect. 15 19
124 16.33 radiation 40.0 10 < th dose independent rect. 8 9
126 16.33 atmosphere 1005.0 90 > th dose independent rect. 17 14
127 16.33 humidity 60.0 10 > th dose independent rect. 1 15
133 16.33 temperature 30.0 90 < th dose independent rect. 17 18
134 16.33 atmosphere 1000.0 90 > th dose independent rect. 17 18
142 16.35 radiation 40.0 720 < th dose independent sin 12 NA
155 16.36 radiation 40.0 270 < th dose independent rect. 11 2
167 16.36 atmosphere 995.0 90 > th dose dependent rect. 17 18
168 16.37 temperature 30.0 720 < th dose independent rect. 15 2
169 16.37 humidity 60.0 10 > th dose independent rect. 11 6
185 16.38 atmosphere 995.0 90 > th dose dependent rect. 17 14
187 16.38 radiation 20.0 720 > th dose dependent rect. 15 17
192 16.39 radiation 40.0 720 < th dose independent rect. 17 16
195 16.39 radiation 20.0 720 < th dose dependent rect. 16 7
197 16.39 temperature 30.0 90 < th dose dependent rect. 17 17
208 16.40 humidity 50.0 10 > th dose dependent rect. 8 9
209 16.40 humidity 50.0 90 > th dose dependent rect. 7 10
210 16.40 atmosphere 1000.0 10 > th dose dependent rect. 17 14
222 16.41 radiation 40.0 720 < th dose independent rect. 17 20
223 16.41 radiation 10.0 30 < th dose independent rect. 5 22
226 16.41 humidity 50.0 90 > th dose dependent rect. 1 14
231 16.42 humidity 60.0 90 > th dose independent sin 7 NA
235 16.42 radiation 40.0 10 < th dose independent rect. 3 13
240 16.42 radiation 20.0 720 > th dose independent rect. 16 15
248 16.43 radiation 40.0 90 < th dose independent sin 7 NA
264 16.43 atmosphere 995.0 10 > th dose dependent rect. 17 10
266 16.43 humidity 50.0 90 > th dose dependent rect. 19 22
269 16.44 wind 1.0 270 > th dose independent rect. 10 5
273 16.44 atmosphere 995.0 1440 > th dose independent rect. 18 10
292 16.45 radiation 10.0 720 < th dose independent rect. 16 7
299 16.45 atmosphere 1000.0 270 > th dose independent rect. 14 21
303 16.45 humidity 50.0 10 > th dose dependent rect. 24 15
306 16.45 humidity 50.0 90 > th dose dependent rect. 19 20
307 16.46 radiation 20.0 720 > th dose independent rect. 16 1
336 16.46 radiation 40.0 270 < th dose dependent rect. 10 3
339 16.46 radiation 40.0 90 < th dose dependent rect. 7 10
350 16.47 radiation 1.0 720 > th dose dependent rect. 16 1
354 16.47 radiation 1.0 720 < th dose dependent rect. 7 13
362 16.48 wind 9.0 270 < th dose independent rect. 10 5
374 16.48 humidity 50.0 270 > th dose independent rect. 15 19
379 16.48 humidity 50.0 30 > th dose dependent sin 7 NA
390 16.48 humidity 50.0 30 > th dose dependent rect. 21 18
391 16.48 humidity 50.0 30 > th dose dependent rect. 21 20
396 16.49 radiation 40.0 720 < th dose independent sin 4 NA
413 16.49 radiation 40.0 270 < th dose dependent sin 11 NA
416 16.49 atmosphere 995.0 270 > th dose dependent rect. 15 7
431 16.50 temperature 30.0 270 < th dose independent rect. 14 9
438 16.50 humidity 50.0 90 > th dose independent rect. 17 18
442 16.50 humidity 60.0 90 > th dose independent rect. 19 22
454 16.50 radiation 40.0 270 < th dose dependent rect. 21 16
470 16.51 atmosphere 1000.0 270 > th dose independent rect. 15 8
471 16.51 humidity 70.0 720 > th dose independent rect. 3 9
472 16.51 humidity 60.0 10 > th dose independent rect. 8 9
490 16.51 humidity 50.0 30 > th dose dependent rect. 3 12
512 16.52 temperature 10.0 270 > th dose independent rect. 10 5
513 16.52 atmosphere 1015.0 270 < th dose independent rect. 10 5
535 16.52 temperature 10.0 270 > th dose independent rect. 15 19
539 16.52 radiation 30.0 720 < th dose independent rect. 15 21
567 16.53 precipitation 0.1 270 < th dose independent rect. 10 5
589 16.53 precipitation 0.1 270 < th dose dependent rect. 10 5
613 16.54 atmosphere 995.0 270 > th dose independent rect. 10 5
653 16.54 humidity 90.0 30 < th dose dependent rect. 17 19
665 16.55 atmosphere 1005.0 90 > th dose independent rect. 17 10
679 16.55 precipitation 0.1 270 < th dose independent rect. 15 19
680 16.55 humidity 70.0 720 > th dose independent rect. 15 21
682 16.55 radiation 40.0 270 < th dose dependent rect. 11 1
699 16.55 precipitation 0.1 270 < th dose dependent rect. 15 19
764 16.57 temperature 10.0 90 > th dose independent rect. 17 18
769 16.57 humidity 70.0 720 > th dose independent rect. 18 19
773 16.57 humidity 50.0 270 > th dose independent rect. 14 21
791 16.57 radiation 1.0 720 > th dose dependent rect. 15 15
812 16.58 atmosphere 995.0 1440 > th dose independent rect. 18 8
863 16.58 humidity 90.0 90 < th dose dependent rect. 16 21
874 16.59 radiation 30.0 720 < th dose independent rect. 15 8
881 16.59 radiation 10.0 720 < th dose independent rect. 15 15
913 16.60 temperature 10.0 43200 > th dose independent sin 21 NA
918 16.60 radiation 10.0 720 < th dose independent rect. 16 5
928 16.60 radiation 1.0 720 < th dose independent rect. 7 14
934 16.60 atmosphere 1015.0 270 < th dose independent rect. 23 16
938 16.60 wind 9.0 270 < th dose independent rect. 15 19
959 16.60 radiation 1.0 720 > th dose dependent rect. 15 21
960 16.60 radiation 20.0 720 > th dose dependent rect. 14 22
982 16.61 temperature 30.0 270 < th dose independent rect. 5 14
985 16.61 wind 9.0 270 < th dose independent rect. 23 16
986 16.61 temperature 20.0 270 > th dose independent rect. 10 16
990 16.61 temperature 20.0 10 > th dose independent rect. 12 17
994 16.61 wind 9.0 90 < th dose independent rect. 17 18
997 16.61 precipitation 0.1 90 < th dose independent rect. 17 18