Os06g0301000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os06g0301000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.95 | 0.21 | 11.9 | 0.826 | 0.225 | -0.751 | 0.404 | 1.43 | 0.332 | 20.7 | 21.55 | 1239 | -- | -- |
| 22.42 | 0.222 | 12 | 0.393 | 0.493 | -0.987 | -0.279 | -- | 0.23 | 15.8 | 17.06 | 6978 | -- | -- |
| 20.15 | 0.209 | 11.9 | 0.907 | 0.22 | -0.748 | -- | 1.78 | 0.345 | 19.6 | 22.7 | 1310 | -- | -- |
| 22.5 | 0.222 | 12 | 0.398 | 0.491 | -1.12 | -- | -- | 0.23 | 16 | 10.05 | 7866 | -- | -- |
| 22.65 | 0.222 | 11.9 | 0.884 | -- | -0.735 | -- | 1.65 | 0.338 | -- | 22.69 | 1357 | -- | -- |
| 34.64 | 0.276 | 12 | 0.18 | 0.241 | -- | -0.014 | -- | 0.0728 | 18.2 | -- | -- | -- | -- |
| 34.64 | 0.276 | 12 | 0.18 | 0.241 | -- | -- | -- | 0.0727 | 18.2 | -- | -- | -- | -- |
| 25.31 | 0.234 | 11.9 | 0.635 | -- | -0.865 | -- | -- | 0.325 | -- | 8.665 | 8559 | -- | -- |
| 26.29 | 0.24 | 12 | -- | 0.435 | -0.932 | -- | -- | 0.163 | 16.2 | 10.05 | 7866 | -- | -- |
| 37.65 | 0.287 | 12 | 0.173 | -- | -- | -- | -- | 0.0675 | -- | -- | -- | -- | -- |
| 35.49 | 0.279 | 12 | -- | 0.238 | -- | -- | -- | 0.0527 | 18.2 | -- | -- | -- | -- |
| 29.88 | 0.255 | 12 | -- | -- | -0.459 | -- | -- | 0.127 | -- | 21.96 | 2834 | -- | -- |
| 38.45 | 0.289 | 12 | -- | -- | -- | -- | -- | 0.0482 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.71 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 3 | 19.84 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 14 | 20.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 19 | 20.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 48 | 20.16 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 49 | 20.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 62 | 20.19 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 64 | 20.19 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 99 | 20.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 124 | 20.34 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 20 |
| 134 | 20.38 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 142 | 20.40 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 144 | 20.40 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 202 | 20.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 438 | 20.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 18 |
| 512 | 20.85 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 568 | 20.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 653 | 20.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 19 |
| 745 | 21.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 836 | 21.10 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 897 | 21.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 931 | 21.18 | temperature | 30 | 1440 | < th | dose dependent | sin | 19 | NA |