BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0420000 Os07g0420000|J100068A16
         (160 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0420000  Conserved hypothetical protein                      298   2e-81
Os10g0427900  Conserved hypothetical protein                       74   6e-14

>Os07g0420000 Conserved hypothetical protein
          Length = 160

 Score =  298 bits (762), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 149/160 (93%), Positives = 149/160 (93%)

Query: 1   MPLQSTAGPATXXXXXXXXXXXRVNARRSPSLDQRRRYRASTAGPPQSLHASSRVPAARH 60
           MPLQSTAGPAT           RVNARRSPSLDQRRRYRASTAGPPQSLHASSRVPAARH
Sbjct: 1   MPLQSTAGPATPSSLLLPPPLSRVNARRSPSLDQRRRYRASTAGPPQSLHASSRVPAARH 60

Query: 61  RIVCPCRRRGGSPSLTRRSSPEKPGPFSQTRSPETEKMNKRVERRKRVSRMLPAPIPLHV 120
           RIVCPCRRRGGSPSLTRRSSPEKPGPFSQTRSPETEKMNKRVERRKRVSRMLPAPIPLHV
Sbjct: 61  RIVCPCRRRGGSPSLTRRSSPEKPGPFSQTRSPETEKMNKRVERRKRVSRMLPAPIPLHV 120

Query: 121 REFWHHGMNYLFGPRDLMPVVNVVVCIGCDPFTDWLLGSF 160
           REFWHHGMNYLFGPRDLMPVVNVVVCIGCDPFTDWLLGSF
Sbjct: 121 REFWHHGMNYLFGPRDLMPVVNVVVCIGCDPFTDWLLGSF 160



>Os10g0427900 Conserved hypothetical protein
          Length = 115

 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 41/53 (77%)

Query: 1   MPLQSTAGPATXXXXXXXXXXXRVNARRSPSLDQRRRYRASTAGPPQSLHASS 53
           MPLQSTAGPAT           RVNARRSPSLDQRRRYRASTAGPPQSL ASS
Sbjct: 63  MPLQSTAGPATPSSLLLPPPLSRVNARRSPSLDQRRRYRASTAGPPQSLRASS 115



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.135    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,388,266
Number of extensions: 306768
Number of successful extensions: 1330
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1330
Number of HSP's successfully gapped: 2
Length of query: 160
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 67
Effective length of database: 12,179,899
Effective search space: 816053233
Effective search space used: 816053233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)