Os07g0420000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0420000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.18 | 0.617 | 8.24 | -2.25 | 1.04 | 1.06 | -0.522 | -0.326 | -0.99 | 9.77 | 10.19 | 1475 | -- | -- |
| 172.35 | 0.611 | 8.24 | -2.21 | 1.05 | 1.06 | -0.502 | -- | -0.976 | 9.76 | 10.18 | 1484 | -- | -- |
| 173.13 | 0.613 | 8.25 | -2.27 | 1.04 | 1.08 | -- | -0.312 | -0.997 | 9.8 | 10 | 1476 | -- | -- |
| 173.35 | 0.613 | 8.25 | -2.23 | 1.04 | 1.07 | -- | -- | -0.99 | 9.81 | 10 | 1478 | -- | -- |
| 206.44 | 0.669 | 8.26 | -2.16 | -- | 1.9 | -- | -0.605 | -0.856 | -- | 2.099 | 1570 | -- | -- |
| 202.23 | 0.667 | 8.16 | -1.88 | 1.06 | -- | -0.658 | -- | -0.661 | 9.77 | -- | -- | -- | -- |
| 203.88 | 0.669 | 8.16 | -1.9 | 1.06 | -- | -- | -- | -0.662 | 9.81 | -- | -- | -- | -- |
| 205.39 | 0.667 | 8.26 | -2.12 | -- | 1.96 | -- | -- | -0.953 | -- | 2.15 | 1568 | -- | -- |
| 258.46 | 0.749 | 8.17 | -- | 1.02 | 1.03 | -- | -- | -0.753 | 9.79 | 29.99 | 25943 | -- | -- |
| 270.82 | 0.769 | 8.19 | -1.91 | -- | -- | -- | -- | -0.661 | -- | -- | -- | -- | -- |
| 299.14 | 0.809 | 8.12 | -- | 1.07 | -- | -- | -- | -0.45 | 9.94 | -- | -- | -- | -- |
| 302.63 | 0.813 | 8.14 | -- | -- | 0.774 | -- | -- | -0.437 | -- | 7.7 | 1601 | -- | -- |
| 367.24 | 0.894 | 8.15 | -- | -- | -- | -- | -- | -0.449 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 164.16 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 4 | 164.30 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 8 | 164.35 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 13 | 164.78 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 20 | 164.91 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 54 | 165.55 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 138 | 166.16 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 247 | 167.29 | radiation | 30 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 303 | 167.79 | radiation | 10 | 1440 | > th | dose independent | sin | 19 | NA |
| 402 | 168.57 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 425 | 168.79 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 469 | 169.15 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 477 | 169.28 | humidity | 60 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 480 | 169.32 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 501 | 169.37 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 525 | 169.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 529 | 169.43 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 537 | 169.45 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 570 | 169.52 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 600 | 169.69 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 618 | 169.76 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 5 |
| 628 | 169.87 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 629 | 169.88 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 630 | 169.89 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 632 | 169.91 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 634 | 169.91 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 648 | 169.98 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 685 | 170.09 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 713 | 170.34 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 761 | 170.46 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 911 | 170.76 | radiation | 1 | 1440 | < th | dose independent | sin | 19 | NA |