BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0416100 Os07g0416100|AK063097
         (71 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0416100  Similar to WRKY transcription factor 53 (Trans...   122   6e-29
Os05g0343400  WRKY transcription factor 53 (Transcription fa...    76   6e-15

>Os07g0416100 Similar to WRKY transcription factor 53 (Transcription factor
          WRKY12)
          Length = 71

 Score =  122 bits (306), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/71 (85%), Positives = 61/71 (85%)

Query: 1  MPLRAASFSTCRNTSSGCVXXXXXXXXXXPSGAGTDQYSAVMPENSSVTFGDDEADNGSH 60
          MPLRAASFSTCRNTSSGCV          PSGAGTDQYSAVMPENSSVTFGDDEADNGSH
Sbjct: 1  MPLRAASFSTCRNTSSGCVAADCADDLAAPSGAGTDQYSAVMPENSSVTFGDDEADNGSH 60

Query: 61 RSEGDEPEAKR 71
          RSEGDEPEAKR
Sbjct: 61 RSEGDEPEAKR 71



>Os05g0343400 WRKY transcription factor 53 (Transcription factor WRKY12)
          Length = 487

 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 36/40 (90%)

Query: 32  GAGTDQYSAVMPENSSVTFGDDEADNGSHRSEGDEPEAKR 71
           GAG DQYSA  PENSSVTFGDDEADN SHRSEGDEPEAKR
Sbjct: 273 GAGADQYSAATPENSSVTFGDDEADNASHRSEGDEPEAKR 312



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.306    0.122    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,366,731
Number of extensions: 75045
Number of successful extensions: 166
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 2
Length of query: 71
Length of database: 17,035,801
Length adjustment: 42
Effective length of query: 29
Effective length of database: 14,842,813
Effective search space: 430441577
Effective search space used: 430441577
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 149 (62.0 bits)