Os07g0416100 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0416100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to WRKY transcription factor 53 (Transcription factor WRKY12).

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.57	(0.0608)	R²	:	0.203
β₁	:	-0.998	(0.215)	R²_dD	:	0.0471	R²_D	:	0.0244
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	0.207	(0.212)	R²_dE	:	0.00243	R²_E	:	0.0087
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	5.74	(0.94)	R²_dD*E	:	0.0883	R²_D*E	:	0.0745
γ₁	:	-0.742	(0.124)	R²_dN8	:	0.0992	R²_N8	:	0.0606
σ	:	1
deviance	:	461.73
__

_____

C
peak time of C	:	--
E
wheather	:	wind
threshold	:	0.8453
memory length	:	4555
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	4.97
open length of G	:	2.04

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
444.67	0.991	4.57	-1	0.503	0.0991	1	5.9	-0.781	10.4	0.9397	4229	4.98	2.04
476.52	1.02	4.71	-1.17	0.56	0.268	1.04	--	-0.753	10.5	0.3023	3437	4.83	2.23
447.35	0.985	4.56	-0.933	0.479	0.128	--	6.11	-0.759	10.8	0.9577	4547	4.99	2.02
477.84	1.02	4.7	-1.3	0.559	0.673	--	--	-0.739	10.8	0.08215	3475	4.83	2.22
461.73	1	4.57	-0.998	--	0.207	--	5.74	-0.742	--	0.8453	4555	4.97	2.04
480.68	1.03	4.75	-1.09	0.532	--	1.28	--	-0.878	10.1	--	--	--	--
486.85	1.03	4.75	-1.03	0.525	--	--	--	-0.873	10.7	--	--	--	--
483.72	1.02	4.79	-1.23	--	0.615	--	--	-0.953	--	5.465	665	5.22	2
511.9	1.05	4.75	--	0.612	-0.34	--	--	-0.848	11.2	5.221	3774	6.35	1.89
503.86	1.05	4.76	-1.04	--	--	--	--	-0.876	--	--	--	--	--
515.05	1.06	4.72	--	0.533	--	--	--	-0.758	10.8	--	--	--	--
510.84	1.05	4.75	--	--	0.559	--	--	-0.802	--	8.401	690	4.87	2.09
532.63	1.08	4.73	--	--	--	--	--	-0.76	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	445.74	wind	1.0	4320	< th	dose dependent	rect.	5	2
2	449.93	wind	7.0	43200	> th	dose dependent	rect.	16	1
3	450.04	wind	7.0	14400	> th	dose independent	rect.	23	2
4	450.49	wind	1.0	4320	> th	dose independent	rect.	5	2
5	450.55	wind	1.0	4320	< th	dose independent	rect.	5	2
6	451.00	wind	7.0	14400	> th	dose dependent	rect.	23	2
7	451.20	humidity	50.0	14400	> th	dose dependent	rect.	24	1
10	451.63	wind	7.0	14400	< th	dose independent	rect.	23	2
15	452.47	wind	9.0	43200	< th	dose independent	rect.	16	4
16	452.54	wind	7.0	43200	> th	dose dependent	rect.	16	3
18	452.91	wind	7.0	43200	> th	dose dependent	rect.	18	2
24	453.02	humidity	50.0	14400	> th	dose dependent	rect.	23	8
26	453.03	humidity	80.0	14400	> th	dose dependent	rect.	23	8
36	453.20	wind	9.0	43200	< th	dose independent	rect.	16	1
43	453.46	temperature	20.0	1440	> th	dose independent	rect.	22	1
45	453.49	temperature	20.0	1440	< th	dose independent	rect.	22	1
47	453.63	wind	9.0	43200	> th	dose independent	rect.	16	4
52	453.67	humidity	90.0	14400	> th	dose dependent	rect.	5	2
56	453.81	temperature	20.0	720	> th	dose independent	rect.	24	1
70	454.10	temperature	20.0	720	> th	dose independent	rect.	22	3
106	454.84	wind	7.0	43200	> th	dose independent	rect.	18	1
114	454.90	humidity	90.0	14400	> th	dose independent	rect.	4	3
115	454.93	temperature	20.0	270	> th	dose independent	rect.	23	11
138	455.26	humidity	50.0	90	> th	dose independent	rect.	2	22
141	455.36	humidity	90.0	14400	> th	dose dependent	rect.	3	12
157	455.56	wind	1.0	14400	> th	dose independent	rect.	24	2
161	455.56	humidity	90.0	14400	> th	dose dependent	rect.	1	15
176	455.73	wind	1.0	14400	< th	dose independent	rect.	24	2
199	456.03	wind	7.0	43200	< th	dose independent	rect.	18	1
235	456.35	humidity	90.0	1440	> th	dose independent	rect.	24	1
243	456.42	wind	1.0	14400	< th	dose dependent	rect.	23	3
259	456.58	humidity	90.0	14400	> th	dose dependent	sin	3	NA
280	456.73	temperature	20.0	270	> th	dose independent	sin	7	NA
310	457.02	wind	7.0	90	> th	dose dependent	rect.	23	2
316	457.07	atmosphere	1015.0	43200	< th	dose independent	rect.	19	1
329	457.21	temperature	20.0	1440	< th	dose independent	rect.	5	4
336	457.27	humidity	90.0	14400	< th	dose independent	rect.	3	4
342	457.35	wind	1.0	14400	< th	dose dependent	rect.	23	5
363	457.52	temperature	20.0	1440	> th	dose independent	rect.	5	4
372	457.60	humidity	90.0	14400	> th	dose independent	rect.	23	17
384	457.69	humidity	90.0	1440	> th	dose dependent	rect.	24	1
386	457.70	humidity	90.0	14400	> th	dose independent	rect.	23	8
436	458.05	humidity	90.0	14400	> th	dose independent	rect.	23	2
462	458.18	wind	7.0	43200	< th	dose dependent	rect.	13	1
463	458.20	humidity	90.0	14400	< th	dose independent	rect.	23	1
491	458.38	atmosphere	1015.0	43200	> th	dose independent	rect.	17	4
492	458.38	humidity	90.0	14400	< th	dose dependent	rect.	23	2
493	458.39	wind	5.0	43200	< th	dose independent	rect.	13	1
494	458.39	wind	3.0	43200	< th	dose dependent	rect.	21	1
513	458.46	temperature	20.0	270	> th	dose independent	rect.	22	16
520	458.52	wind	1.0	270	> th	dose independent	rect.	2	11
531	458.56	radiation	1.0	14400	< th	dose independent	rect.	15	1
541	458.60	radiation	1.0	14400	> th	dose independent	rect.	15	1
542	458.60	wind	7.0	43200	< th	dose independent	rect.	15	15
543	458.60	wind	1.0	43200	> th	dose dependent	rect.	13	1
544	458.61	wind	9.0	43200	> th	dose independent	rect.	8	11
556	458.67	wind	7.0	43200	< th	dose independent	rect.	14	18
566	458.72	atmosphere	1015.0	43200	> th	dose independent	rect.	13	8
567	458.72	wind	7.0	43200	> th	dose independent	rect.	15	15
582	458.79	radiation	1.0	43200	< th	dose dependent	rect.	23	2
588	458.81	humidity	90.0	14400	< th	dose independent	rect.	23	8
590	458.83	atmosphere	1015.0	43200	< th	dose independent	rect.	15	6
593	458.84	wind	3.0	43200	< th	dose independent	rect.	10	5
600	458.86	wind	9.0	43200	> th	dose independent	rect.	8	9
602	458.88	precipitation	0.1	43200	< th	dose independent	rect.	19	2
604	458.88	atmosphere	1015.0	43200	< th	dose independent	rect.	13	7
605	458.88	wind	7.0	43200	> th	dose independent	rect.	15	17
606	458.88	wind	3.0	43200	< th	dose dependent	rect.	10	1
607	458.88	precipitation	0.1	43200	< th	dose dependent	rect.	19	2
611	458.92	wind	5.0	43200	> th	dose independent	rect.	13	1
617	458.93	precipitation	0.1	43200	> th	dose independent	rect.	19	2
630	458.95	atmosphere	1015.0	43200	> th	dose dependent	rect.	12	3
631	458.95	atmosphere	1015.0	43200	> th	dose dependent	rect.	11	13
636	458.97	wind	7.0	90	> th	dose independent	rect.	23	2
638	458.97	humidity	90.0	14400	< th	dose independent	rect.	23	17
649	458.99	atmosphere	1015.0	43200	> th	dose dependent	rect.	20	2
670	459.04	atmosphere	1015.0	43200	> th	dose dependent	rect.	13	1
676	459.05	atmosphere	1015.0	43200	> th	dose dependent	rect.	11	6
679	459.07	humidity	50.0	270	> th	dose independent	rect.	2	11
683	459.07	temperature	30.0	90	< th	dose independent	rect.	2	22
696	459.10	wind	3.0	43200	> th	dose independent	rect.	10	5
714	459.14	wind	5.0	43200	< th	dose dependent	rect.	10	5
740	459.22	precipitation	0.1	43200	> th	dose dependent	rect.	17	4
749	459.24	atmosphere	1015.0	43200	> th	dose dependent	rect.	17	7
756	459.26	atmosphere	1015.0	43200	> th	dose dependent	rect.	18	5
770	459.28	precipitation	0.1	43200	> th	dose dependent	rect.	19	2
809	459.37	atmosphere	1015.0	43200	> th	dose dependent	sin	18	NA
814	459.38	humidity	50.0	90	> th	dose independent	rect.	10	13
869	459.50	wind	9.0	43200	> th	dose independent	sin	23	NA
877	459.52	wind	9.0	43200	< th	dose independent	rect.	8	11
891	459.55	atmosphere	1015.0	43200	> th	dose independent	rect.	13	4
921	459.61	atmosphere	1015.0	43200	< th	dose independent	rect.	14	2
950	459.64	humidity	90.0	14400	> th	dose independent	sin	5	NA
953	459.64	radiation	1.0	43200	< th	dose dependent	rect.	19	6
959	459.66	temperature	20.0	720	> th	dose independent	rect.	19	15
991	459.71	wind	9.0	43200	> th	dose independent	rect.	21	22
994	459.71	wind	7.0	43200	> th	dose dependent	rect.	15	17