Os05g0343400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WRKY transcription factor 53 (Transcription factor WRKY12).
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Os05g0343400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WRKY transcription factor 53 (Transcription factor WRKY12).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.33 | 0.555 | 12.6 | 1.81 | 1.54 | -1.46 | 0.277 | 0.869 | 0.429 | 18.5 | 80.98 | 1176 | -- | -- |
| 140.25 | 0.552 | 12.7 | 1.75 | 1.53 | -1.39 | 0.266 | -- | 0.414 | 18.5 | 81 | 1175 | -- | -- |
| 139.52 | 0.55 | 12.6 | 1.81 | 1.54 | -1.46 | -- | 0.882 | 0.43 | 18.5 | 81 | 1176 | -- | -- |
| 140.46 | 0.552 | 12.7 | 1.73 | 1.53 | -1.38 | -- | -- | 0.415 | 18.4 | 81 | 1181 | -- | -- |
| 254.02 | 0.742 | 12.6 | 1.77 | -- | -1.57 | -- | 0.892 | 0.415 | -- | 83.52 | 1289 | -- | -- |
| 181.16 | 0.631 | 12.6 | 1.51 | 1.57 | -- | 0.2 | -- | 0.461 | 17.7 | -- | -- | -- | -- |
| 181.26 | 0.63 | 12.6 | 1.51 | 1.57 | -- | -- | -- | 0.462 | 17.7 | -- | -- | -- | -- |
| 254.62 | 0.743 | 12.6 | 1.69 | -- | -1.5 | -- | -- | 0.4 | -- | 84 | 1294 | -- | -- |
| 212.38 | 0.679 | 12.7 | -- | 1.48 | -1.24 | -- | -- | 0.329 | 18.3 | 111.9 | 1227 | -- | -- |
| 308.99 | 0.821 | 12.6 | 1.46 | -- | -- | -- | -- | 0.425 | -- | -- | -- | -- | -- |
| 241.35 | 0.727 | 12.7 | -- | 1.55 | -- | -- | -- | 0.294 | 17.8 | -- | -- | -- | -- |
| 322.34 | 0.836 | 12.6 | -- | -- | -1.37 | -- | -- | 0.309 | -- | 105.4 | 1298 | -- | -- |
| 365.27 | 0.892 | 12.7 | -- | -- | -- | -- | -- | 0.263 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.29 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 3 | 142.36 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 4 | 142.42 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 15 | 142.51 | humidity | 80 | 720 | < th | dose dependent | sin | 14 | NA |
| 73 | 143.29 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 84 | 143.40 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 10 |
| 98 | 143.56 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 132 | 144.13 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 160 | 144.43 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 6 |
| 180 | 144.59 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 4 |
| 193 | 144.61 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 224 | 144.77 | humidity | 70 | 1440 | > th | dose independent | sin | 15 | NA |
| 235 | 144.84 | humidity | 50 | 1440 | > th | dose dependent | sin | 19 | NA |
| 292 | 145.32 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 2 |
| 325 | 145.50 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 334 | 145.52 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 8 |
| 336 | 145.52 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 12 |
| 400 | 145.80 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 15 |
| 401 | 145.81 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 450 | 145.96 | humidity | 70 | 1440 | < th | dose independent | rect. | 13 | 7 |
| 477 | 146.02 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 4 |
| 607 | 146.48 | humidity | 80 | 1440 | < th | dose dependent | rect. | 3 | 18 |
| 665 | 146.57 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 770 | 146.85 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 953 | 147.26 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 23 |