BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0281000 Os07g0281000|AK111689
         (486 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0281000  Zinc finger, CCCH-type domain containing protein    738   0.0  
Os06g0170500  Similar to RNA-binding protein-like                 714   0.0  

>Os07g0281000 Zinc finger, CCCH-type domain containing protein
          Length = 486

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/388 (92%), Positives = 357/388 (92%)

Query: 1   MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR 60
           MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
Sbjct: 1   MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALSTNSNDAIPRSDVNREYFAE 120
           DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALSTNSNDAIPRSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALSTNSNDAIPRSDVNREYFAE 120

Query: 121 EHDRRARAGIDYDSSNGKARANDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR 180
           EHDRRARAGIDYDSSNGKARANDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR
Sbjct: 121 EHDRRARAGIDYDSSNGKARANDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLTPPDDESIRTLYIGGLDSRVT 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLTPPDDESIRTLYIGGLDSRVT
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLTPPDDESIRTLYIGGLDSRVT 240

Query: 241 EQDLRDQFYAHGEIETIRMVLQRACAFVTYTTRXXXXXXXXXXXNKLVIKGVRLKLMWGK 300
           EQDLRDQFYAHGEIETIRMVLQRACAFVTYTTR           NKLVIKGVRLKLMWGK
Sbjct: 241 EQDLRDQFYAHGEIETIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGK 300

Query: 301 PQAPKPEEDEAGRQGHVAHGGMLPRAVIXXXXXXXXXXXXXXXXXXXXASASYYFNIPAP 360
           PQAPKPEEDEAGRQGHVAHGGMLPRAVI                    ASASYYFNIPAP
Sbjct: 301 PQAPKPEEDEAGRQGHVAHGGMLPRAVISQQQSGDQPQPPGMEGQQQPASASYYFNIPAP 360

Query: 361 PAAERTLYPSMDPQRMGALVESQEGDGK 388
           PAAERTLYPSMDPQRMGALVESQEGDGK
Sbjct: 361 PAAERTLYPSMDPQRMGALVESQEGDGK 388



>Os06g0170500 Similar to RNA-binding protein-like
          Length = 482

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/388 (87%), Positives = 351/388 (90%)

Query: 1   MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR 60
           MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
Sbjct: 1   MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALSTNSNDAIPRSDVNREYFAE 120
           DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTAL+ NSNDAIPRSDVNREYFAE
Sbjct: 61  DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE 120

Query: 121 EHDRRARAGIDYDSSNGKARANDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR 180
           EHDR+ARAGIDYDSS+GKAR NDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR
Sbjct: 121 EHDRKARAGIDYDSSHGKARPNDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR 180

Query: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLTPPDDESIRTLYIGGLDSRVT 240
           HEMPETGELSQQNIKDRYYGVNDPVALKLL KAGEMPSLTPPDDESIRTLYIGGL++R+T
Sbjct: 181 HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLTPPDDESIRTLYIGGLNNRIT 240

Query: 241 EQDLRDQFYAHGEIETIRMVLQRACAFVTYTTRXXXXXXXXXXXNKLVIKGVRLKLMWGK 300
           EQDLRDQFYAHGEIE+IRMVLQRACAFVTYTTR           NKLVIKG+RLKLMWGK
Sbjct: 241 EQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGIRLKLMWGK 300

Query: 301 PQAPKPEEDEAGRQGHVAHGGMLPRAVIXXXXXXXXXXXXXXXXXXXXASASYYFNIPAP 360
           PQAPKPE+DEAGRQGHVAHGGMLPRAVI                     S SYYFNIPAP
Sbjct: 301 PQAPKPEDDEAGRQGHVAHGGMLPRAVISQQQSGDQPQPPGMEGQQQAPSGSYYFNIPAP 360

Query: 361 PAAERTLYPSMDPQRMGALVESQEGDGK 388
           P AERTLYPSMDPQRMGALV+SQEGDGK
Sbjct: 361 PGAERTLYPSMDPQRMGALVKSQEGDGK 388



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,254,607
Number of extensions: 506799
Number of successful extensions: 1301
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1302
Number of HSP's successfully gapped: 2
Length of query: 486
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 381
Effective length of database: 11,553,331
Effective search space: 4401819111
Effective search space used: 4401819111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)