Os06g0170500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA-binding protein-like.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0170500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to RNA-binding protein-like.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.13 | 0.249 | 12.6 | 0.748 | 0.925 | 1.29 | 0.468 | 0.315 | -9.66 | 19.3 | 1.431 | 726 | -- | -- |
| 28.15 | 0.247 | 12.6 | 0.755 | 0.927 | 1.3 | 0.281 | -- | -9.66 | 19.4 | 1.51 | 735 | -- | -- |
| 27.9 | 0.246 | 12.6 | 0.776 | 0.902 | 1.24 | -- | -0.32 | -9.65 | 20.5 | 1.968 | 846 | -- | -- |
| 28.06 | 0.247 | 12.6 | 0.751 | 0.902 | 1.25 | -- | -- | -9.66 | 20.4 | 1.858 | 841 | -- | -- |
| 30.12 | 0.256 | 12.6 | 0.741 | -- | 0.918 | -- | 0.305 | -9.56 | -- | 2.403 | 1681 | -- | -- |
| 31.05 | 0.261 | 12.6 | 0.657 | 0.417 | -- | 0.205 | -- | -9.71 | 1.49 | -- | -- | -- | -- |
| 31.22 | 0.262 | 12.6 | 0.65 | 0.417 | -- | -- | -- | -9.71 | 1.52 | -- | -- | -- | -- |
| 29.32 | 0.252 | 12.5 | 0.765 | -- | 0.836 | -- | -- | -9.62 | -- | 2.278 | 1704 | -- | -- |
| 40.73 | 0.297 | 12.6 | -- | 0.595 | 0.502 | -- | -- | -9.73 | 23.8 | 9.907 | 1077 | -- | -- |
| 41.86 | 0.302 | 12.6 | 0.666 | -- | -- | -- | -- | -9.7 | -- | -- | -- | -- | -- |
| 42.34 | 0.304 | 12.6 | -- | 0.428 | -- | -- | -- | -9.78 | 1.57 | -- | -- | -- | -- |
| 43.59 | 0.307 | 12.6 | -- | -- | 0.68 | -- | -- | -9.67 | -- | 9.392 | 1740 | -- | -- |
| 53.57 | 0.342 | 12.6 | -- | -- | -- | -- | -- | -9.78 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.90 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 3 | 27.01 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 4 | 27.01 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 6 | 27.04 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 7 | 27.06 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 23 | 27.14 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 25 | 27.15 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 26 | 27.15 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 75 | 27.27 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 99 | 27.33 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 101 | 27.33 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 128 | 27.37 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 248 | 27.58 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 257 | 27.59 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 272 | 27.62 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 282 | 27.65 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 297 | 27.67 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 415 | 27.83 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 15 |
| 427 | 27.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 436 | 27.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 489 | 27.86 | radiation | 10 | 1440 | > th | dose independent | sin | 19 | NA |
| 558 | 27.89 | humidity | 80 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 578 | 27.89 | humidity | 70 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 651 | 27.96 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 671 | 27.96 | humidity | 80 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 741 | 28.00 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 743 | 28.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 750 | 28.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 809 | 28.03 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 810 | 28.03 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 819 | 28.04 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 832 | 28.05 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 866 | 28.06 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 872 | 28.07 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 16 |
| 908 | 28.08 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 924 | 28.09 | humidity | 70 | 1440 | > th | dose dependent | sin | 22 | NA |
| 938 | 28.09 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 992 | 28.11 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |