Os07g0281000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCCH-type domain containing protein.
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Os07g0281000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CCCH-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.28 | 0.236 | 10.2 | -0.457 | 0.514 | -2.01 | 0.165 | 10.1 | 0.0392 | 3 | 999.9 | 323 | -- | -- |
| 26.15 | 0.238 | 10.1 | 0.168 | 0.517 | -0.398 | 0.174 | -- | 0.0349 | 2.98 | 997.1 | 386 | -- | -- |
| 25.37 | 0.235 | 10.2 | -0.468 | 0.516 | -2.03 | -- | 10.2 | 0.0381 | 3.07 | 1000 | 323 | -- | -- |
| 26.25 | 0.239 | 10.1 | 0.166 | 0.518 | -0.4 | -- | -- | 0.0343 | 3.05 | 997.2 | 398 | -- | -- |
| 40.53 | 0.297 | 10.3 | -0.539 | -- | -2.29 | -- | 11.8 | 0.0572 | -- | 1000 | 305 | -- | -- |
| 27.62 | 0.246 | 10.1 | 0.191 | 0.521 | -- | 0.197 | -- | 0.0258 | 2.95 | -- | -- | -- | -- |
| 27.74 | 0.247 | 10.1 | 0.187 | 0.523 | -- | -- | -- | 0.0246 | 3.03 | -- | -- | -- | -- |
| 41.57 | 0.3 | 10.1 | 0.182 | -- | -0.45 | -- | -- | 0.0475 | -- | 997 | 456 | -- | -- |
| 26.93 | 0.242 | 10.1 | -- | 0.523 | -0.467 | -- | -- | 0.0162 | 3.06 | 996.5 | 255 | -- | -- |
| 43.4 | 0.308 | 10.1 | 0.209 | -- | -- | -- | -- | 0.0381 | -- | -- | -- | -- | -- |
| 28.66 | 0.25 | 10.1 | -- | 0.527 | -- | -- | -- | 0.00376 | 3.03 | -- | -- | -- | -- |
| 42.28 | 0.303 | 10.1 | -- | -- | -0.615 | -- | -- | 0.0283 | -- | 996.4 | 814 | -- | -- |
| 44.55 | 0.312 | 10.1 | -- | -- | -- | -- | -- | 0.0149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.17 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 2 | 2 |
| 13 | 24.44 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 24 | 3 |
| 22 | 24.58 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 24 | 24.59 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 29 | 24.65 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 41 | 24.74 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 43 | 24.74 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 46 | 24.74 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 50 | 24.74 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 59 | 24.74 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 60 | 24.74 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 61 | 24.74 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 70 | 24.74 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 76 | 24.79 | temperature | 25.0 | 30 | > th | dose independent | rect. | 1 | 4 |
| 90 | 24.86 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 91 | 24.88 | temperature | 25.0 | 270 | > th | dose dependent | sin | 12 | NA |
| 94 | 24.91 | temperature | 25.0 | 90 | > th | dose independent | rect. | 3 | 2 |
| 95 | 24.91 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 23 |
| 101 | 24.94 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 2 | 3 |
| 103 | 24.95 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 12 |
| 104 | 24.95 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 108 | 24.97 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 112 | 25.00 | atmosphere | 1000.0 | 270 | > th | dose independent | sin | 12 | NA |
| 115 | 25.01 | wind | 1.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 135 | 25.08 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 146 | 25.11 | atmosphere | 1000.0 | 10 | > th | dose independent | sin | 10 | NA |
| 153 | 25.12 | temperature | 25.0 | 270 | > th | dose independent | rect. | 16 | 15 |
| 166 | 25.15 | temperature | 25.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 169 | 25.16 | wind | 1.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 175 | 25.17 | temperature | 25.0 | 270 | > th | dose independent | rect. | 16 | 12 |
| 194 | 25.20 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 11 | 21 |
| 198 | 25.21 | temperature | 30.0 | 720 | > th | dose independent | rect. | 12 | 2 |
| 210 | 25.22 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 221 | 25.26 | radiation | 20.0 | 720 | > th | dose independent | rect. | 16 | 1 |
| 241 | 25.27 | temperature | 25.0 | 270 | > th | dose independent | sin | 14 | NA |
| 253 | 25.28 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 20 | 23 |
| 264 | 25.30 | atmosphere | 1000.0 | 270 | > th | dose independent | no | NA | NA |
| 272 | 25.31 | atmosphere | 1000.0 | 270 | < th | dose independent | no | NA | NA |
| 275 | 25.31 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 3 | 23 |
| 285 | 25.32 | wind | 3.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 292 | 25.33 | humidity | 90.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 296 | 25.33 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 16 | 23 |
| 299 | 25.34 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 307 | 25.34 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 6 | 23 |
| 316 | 25.35 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 9 | 8 |
| 323 | 25.35 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 329 | 25.36 | temperature | 25.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 337 | 25.36 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 23 |
| 344 | 25.36 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 345 | 25.36 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 365 | 25.37 | temperature | 30.0 | 720 | > th | dose independent | rect. | 16 | 22 |
| 366 | 25.37 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 8 | 23 |
| 377 | 25.38 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 378 | 25.38 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 1 |
| 390 | 25.38 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 393 | 25.38 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 402 | 25.38 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 405 | 25.39 | wind | 3.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 406 | 25.39 | wind | 9.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 407 | 25.39 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 410 | 25.39 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 415 | 25.39 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 417 | 25.39 | radiation | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 429 | 25.39 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 433 | 25.39 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 470 | 25.40 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 475 | 25.41 | temperature | 30.0 | 720 | < th | dose independent | sin | 3 | NA |
| 502 | 25.41 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 547 | 25.42 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 548 | 25.42 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 559 | 25.42 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 21 | 21 |
| 565 | 25.43 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 16 | 17 |
| 595 | 25.44 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 602 | 25.44 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 14 | 20 |
| 608 | 25.44 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 654 | 25.46 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 656 | 25.47 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 1 |
| 658 | 25.47 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 676 | 25.47 | temperature | 30.0 | 720 | > th | dose dependent | sin | 0 | NA |
| 711 | 25.47 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 716 | 25.48 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 11 |
| 761 | 25.49 | wind | 1.0 | 90 | > th | dose independent | rect. | 3 | 8 |
| 773 | 25.49 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 5 | 16 |
| 796 | 25.49 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 873 | 25.51 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 933 | 25.52 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 936 | 25.53 | temperature | 30.0 | 720 | > th | dose independent | sin | 3 | NA |
| 937 | 25.53 | atmosphere | 995.0 | 1440 | > th | dose independent | sin | 6 | NA |
| 938 | 25.53 | atmosphere | 1000.0 | 10 | > th | dose independent | no | NA | NA |
| 942 | 25.53 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 23 | 3 |
| 951 | 25.53 | temperature | 30.0 | 720 | < th | dose independent | rect. | 21 | 22 |
| 992 | 25.54 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 993 | 25.54 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 13 | 8 |