BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0248900 Os07g0248900|AK101732
         (411 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0248900  Conserved hypothetical protein                      733   0.0  
Os10g0102900                                                      707   0.0  
Os04g0183100  Conserved hypothetical protein                      620   e-178

>Os07g0248900 Conserved hypothetical protein
          Length = 411

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/392 (91%), Positives = 357/392 (91%)

Query: 20  GFGLEPXXXXXXXXXAPSRNELLTMVKKHSHLIGWTVVDAEDDASDVGMDDRFWHEMLDL 79
           GFGLEP         APSRNELLTMVKKHSHLIGWTVVDAEDDASDVGMDDRFWHEMLDL
Sbjct: 20  GFGLEPSSSSSSSSSAPSRNELLTMVKKHSHLIGWTVVDAEDDASDVGMDDRFWHEMLDL 79

Query: 80  FFVRGRVSKRREEDDLVFFVNNNMKMHGHGFNDNMEDPPPFFVRRWAPMLEKISNINSAG 139
           FFVRGRVSKRREEDDLVFFVNNNMKMHGHGFNDNMEDPPPFFVRRWAPMLEKISNINSAG
Sbjct: 80  FFVRGRVSKRREEDDLVFFVNNNMKMHGHGFNDNMEDPPPFFVRRWAPMLEKISNINSAG 139

Query: 140 VDWERSFYLNLIAHTSYTVTVAICSVRDLRSRVEKSKPLSPVYKVTKTVYASPSRVNFHL 199
           VDWERSFYLNLIAHTSYTVTVAICSVRDLRSRVEKSKPLSPVYKVTKTVYASPSRVNFHL
Sbjct: 140 VDWERSFYLNLIAHTSYTVTVAICSVRDLRSRVEKSKPLSPVYKVTKTVYASPSRVNFHL 199

Query: 200 DRRKAVETVPAYPNICXXXXXXXXXXXXXXLSDPEHCYCVILNAHDGAAFPEDTESKNAS 259
           DRRKAVETVPAYPNIC              LSDPEHCYCVILNAHDGAAFPEDTESKNAS
Sbjct: 200 DRRKAVETVPAYPNICFSVDDFDDTFDAVVLSDPEHCYCVILNAHDGAAFPEDTESKNAS 259

Query: 260 SNLLNTGSNQEKPPKRTLFSGYVSYQNVREAYNAGRSQFGSLLSLGHDQTKLDKLYMRGP 319
           SNLLNTGSNQEKPPKRTLFSGYVSYQNVREAYNAGRSQFGSLLSLGHDQTKLDKLYMRGP
Sbjct: 260 SNLLNTGSNQEKPPKRTLFSGYVSYQNVREAYNAGRSQFGSLLSLGHDQTKLDKLYMRGP 319

Query: 320 EGRGEVEVAVSGIADQSHERSKKDPGDSFRVFVHRXXXXXXXXXXXXYEAASTNKRFDHE 379
           EGRGEVEVAVSGIADQSHERSKKDPGDSFRVFVHR            YEAASTNKRFDHE
Sbjct: 320 EGRGEVEVAVSGIADQSHERSKKDPGDSFRVFVHRAASAASKLAKHAYEAASTNKRFDHE 379

Query: 380 LLPLKCCLMSVSLPWDYIAHDLLHKETPPLDL 411
           LLPLKCCLMSVSLPWDYIAHDLLHKETPPLDL
Sbjct: 380 LLPLKCCLMSVSLPWDYIAHDLLHKETPPLDL 411



>Os10g0102900 
          Length = 418

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/385 (90%), Positives = 347/385 (90%), Gaps = 1/385 (0%)

Query: 21  FGLEPXXXXXXXXX-APSRNELLTMVKKHSHLIGWTVVDAEDDASDVGMDDRFWHEMLDL 79
           FGLEP          APSRNELLTMVKKHSHLIGWTVVDAEDDASDVGMDDRFWHEMLDL
Sbjct: 22  FGLEPSSSSSSSSSSAPSRNELLTMVKKHSHLIGWTVVDAEDDASDVGMDDRFWHEMLDL 81

Query: 80  FFVRGRVSKRREEDDLVFFVNNNMKMHGHGFNDNMEDPPPFFVRRWAPMLEKISNINSAG 139
           FFVRGRVSKRREEDDLVFFVNNNMKMHGHGFNDNMEDPPPFFVRRWAPMLEKISNINSAG
Sbjct: 82  FFVRGRVSKRREEDDLVFFVNNNMKMHGHGFNDNMEDPPPFFVRRWAPMLEKISNINSAG 141

Query: 140 VDWERSFYLNLIAHTSYTVTVAICSVRDLRSRVEKSKPLSPVYKVTKTVYASPSRVNFHL 199
           VDWERSFYLNLIAHTSYTVTVAICSVRDL SR EKSKPLSPVYKVTKTVYASPSRVNFHL
Sbjct: 142 VDWERSFYLNLIAHTSYTVTVAICSVRDLCSRAEKSKPLSPVYKVTKTVYASPSRVNFHL 201

Query: 200 DRRKAVETVPAYPNICXXXXXXXXXXXXXXLSDPEHCYCVILNAHDGAAFPEDTESKNAS 259
           DRRKAVETVPAYPNIC              LSDPEHCYCVILNAHDGAAFPEDTESKNAS
Sbjct: 202 DRRKAVETVPAYPNICFSVDDFDDTFDAVVLSDPEHCYCVILNAHDGAAFPEDTESKNAS 261

Query: 260 SNLLNTGSNQEKPPKRTLFSGYVSYQNVREAYNAGRSQFGSLLSLGHDQTKLDKLYMRGP 319
           SNLLNTGSNQEKPPKRTLFSGYVSYQNVREAYNAGRSQFGSLLSLGHDQTKLDKLYMRGP
Sbjct: 262 SNLLNTGSNQEKPPKRTLFSGYVSYQNVREAYNAGRSQFGSLLSLGHDQTKLDKLYMRGP 321

Query: 320 EGRGEVEVAVSGIADQSHERSKKDPGDSFRVFVHRXXXXXXXXXXXXYEAASTNKRFDHE 379
           EGRGEVEVAVSGIADQSHERSKKDPGDSFRVFVHR            YEAASTNKRFDHE
Sbjct: 322 EGRGEVEVAVSGIADQSHERSKKDPGDSFRVFVHRAASAASKLAKHAYEAASTNKRFDHE 381

Query: 380 LLPLKCCLMSVSLPWDYIAHDLLHK 404
           LLPLKCCLMSVSLPWDYIAHDLLHK
Sbjct: 382 LLPLKCCLMSVSLPWDYIAHDLLHK 406



>Os04g0183100 Conserved hypothetical protein
          Length = 405

 Score =  620 bits (1600), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 306/379 (80%), Positives = 327/379 (86%), Gaps = 5/379 (1%)

Query: 37  SRNELLTMVKKHSHLIGWTVVDAEDDASDVGMDDRFWHEMLDLFFVRGRVSKRREEDDLV 96
           SRN+LL+MVKKHS LIGWTV+DAE DASDV MDD+FWHE+LDLFFV GRVSK REEDDLV
Sbjct: 28  SRNKLLSMVKKHSDLIGWTVIDAEADASDVEMDDKFWHEILDLFFVHGRVSKGREEDDLV 87

Query: 97  FFVNNNMKMHGHGFNDNMEDPPPFFVRRWAPMLEKISNINSAGVDWERSFYLNLIAHTSY 156
           FFVNN MK++G+  +DNME+PPPFFVRRWAP LEKI+NIN A V+WERSFYLNLIAHTSY
Sbjct: 88  FFVNN-MKLNGYRSSDNMENPPPFFVRRWAPKLEKITNINLADVNWERSFYLNLIAHTSY 146

Query: 157 TVTVAICSVRDLRSRVEKSKPLSPVYKVTKTVYASPSRVNFHLDRRKAVETVPAYPNICX 216
           +VTVAICS+ DL +R EKSKPLSPVYKVTKTVYASPSRVNFHLDRRKAVETVPAYPNIC 
Sbjct: 147 SVTVAICSIMDLCNRAEKSKPLSPVYKVTKTVYASPSRVNFHLDRRKAVETVPAYPNICF 206

Query: 217 XXXXXXXX-XXXXXLSDPEHCYCVILNAHDGAAFPEDTESKNASSNLL---NTGSNQEKP 272
                         LSDPEHCYCVILNAHDGAAFPE+TESKN SSN+L   NTGS QEKP
Sbjct: 207 SIDDFDDTFDAVQVLSDPEHCYCVILNAHDGAAFPENTESKNPSSNVLSGVNTGSKQEKP 266

Query: 273 PKRTLFSGYVSYQNVREAYNAGRSQFGSLLSLGHDQTKLDKLYMRGPEGRGEVEVAVSGI 332
           PKRTLFSGYVSYQNVREAY+AGRS+F SL SLGHD+TKLDKLYMRGPEGRGEVEVAVSGI
Sbjct: 267 PKRTLFSGYVSYQNVREAYDAGRSKFESLFSLGHDRTKLDKLYMRGPEGRGEVEVAVSGI 326

Query: 333 ADQSHERSKKDPGDSFRVFVHRXXXXXXXXXXXXYEAASTNKRFDHELLPLKCCLMSVSL 392
           ADQSHERSKKDPG+SFR  VH             YEAASTNKRFD ELLPLKCCLMSVSL
Sbjct: 327 ADQSHERSKKDPGNSFRALVHSAASTASKLAKHAYEAASTNKRFDDELLPLKCCLMSVSL 386

Query: 393 PWDYIAHDLLHKETPPLDL 411
           PWDYIAHDLLHKETPPLDL
Sbjct: 387 PWDYIAHDLLHKETPPLDL 405



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,146,567
Number of extensions: 522527
Number of successful extensions: 985
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 982
Number of HSP's successfully gapped: 3
Length of query: 411
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 308
Effective length of database: 11,657,759
Effective search space: 3590589772
Effective search space used: 3590589772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)