BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0237900 Os07g0237900|J065123P06
         (104 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0237900  Conserved hypothetical protein                      140   2e-34
Os06g0725500  Protein of unknown function DUF241, plant fami...    95   1e-20

>Os07g0237900 Conserved hypothetical protein
          Length = 104

 Score =  140 bits (352), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/104 (71%), Positives = 74/104 (71%)

Query: 1   MGGDRLLDTFLCLADAHGSFQETVATLKQDVAEALVTICRRNDARLASAVHLQXXXXXXX 60
           MGGDRLLDTFLCLADAHGSFQETVATLKQDVAEALVTICRRNDARLASAVHLQ       
Sbjct: 1   MGGDRLLDTFLCLADAHGSFQETVATLKQDVAEALVTICRRNDARLASAVHLQRKAGKKL 60

Query: 61  XXXXXXXXXXXXPSRLGLGRNSTEVEVTGLLXXXXXXXXXXXKI 104
                       PSRLGLGRNSTEVEVTGLL           KI
Sbjct: 61  AYLAAAARDGARPSRLGLGRNSTEVEVTGLLSESAAPSPSPEKI 104



>Os06g0725500 Protein of unknown function DUF241, plant family protein
          Length = 283

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 57/90 (63%)

Query: 2   GGDRLLDTFLCLADAHGSFQETVATLKQDVAEALVTICRRNDARLASAVHLQXXXXXXXX 61
             DRLLD FL LADAHGSFQETV  LKQDVAEAL  I RR+ ARLASAV  Q        
Sbjct: 96  ANDRLLDAFLRLADAHGSFQETVVALKQDVAEALAAIRRRDGARLASAVRSQRKAGKELA 155

Query: 62  XXXXXXXXXXXPSRLGLGRNSTEVEVTGLL 91
                      PSRLGLG ++ EVEVTGLL
Sbjct: 156 RLAAAARDGARPSRLGLGGSAAEVEVTGLL 185



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,135,603
Number of extensions: 47911
Number of successful extensions: 98
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 17,035,801
Length adjustment: 72
Effective length of query: 32
Effective length of database: 13,276,393
Effective search space: 424844576
Effective search space used: 424844576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)