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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0237900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.24 (0.057) R2 : 0.714
β1 : -- (--) R2dD : -- R2D : --
β2 : 5.96 (0.192) R2dC : 1.11 R2C : 0.559
β3 : -2.71 (0.24) R2dE : 0.147 R2E : -0.4
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.631 (0.122) R2dN8 : 0.0225 R2N8 : -0.00654
σ : 1.07
deviance : 526.68
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_____
C
peak time of C : 20.9
E
wheather : humidity
threshold : 76.44
memory length : 989
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 18.1
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
523.05 1.07 5.24 0.218 6.24 -2.87 -0.557 1.85 0.63 20.7 76.53 890 17.4 --
525.89 1.07 5.23 0.133 5.99 -2.72 0.498 -- 0.652 20.8 77 989 18.5 --
520.18 1.06 5.21 0.353 6.02 -2.75 -- 1.75 0.726 20.8 77 994 19.1 --
526.33 1.07 5.23 0.139 5.98 -2.73 -- -- 0.664 20.9 76.73 993 18.3 --
757.48 1.29 5.14 -0.257 -- -4.24 -- -0.0336 0.308 -- 97.27 5766 20.3 --
669.92 1.21 5.26 -0.206 4.54 -- 0.00638 -- 0.341 20.7 -- -- -- --
669.92 1.21 5.26 -0.206 4.54 -- -- -- 0.341 20.7 -- -- -- --
669.92 1.21 5.13 -0.206 -- -4.52 -- -- 0.341 -- 102.4 47520 21.3 --
526.68 1.07 5.24 -- 5.96 -2.71 -- -- 0.631 20.9 76.44 989 18.1 --
1834.09 2 5.14 -0.216 -- -- -- -- 0.304 -- -- -- -- --
671.04 1.21 5.26 -- 4.54 -- -- -- 0.364 20.7 -- -- -- --
671.04 1.21 5.13 -- -- -4.52 -- -- 0.364 -- 138.5 47520 21.3 --
1835.32 2 5.14 -- -- -- -- -- 0.328 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 528.31 humidity 50 1440 > th dose dependent rect. 10 4
3 528.77 humidity 50 1440 > th dose dependent rect. 11 2
4 528.92 humidity 90 1440 < th dose dependent rect. 10 4
7 529.66 humidity 90 1440 < th dose dependent rect. 11 2
14 533.57 humidity 60 720 > th dose dependent rect. 8 17
30 536.54 humidity 90 720 < th dose dependent rect. 10 13
55 538.27 humidity 60 720 > th dose dependent sin 19 NA
58 538.48 humidity 80 1440 < th dose independent rect. 8 7
67 539.29 humidity 80 720 < th dose independent rect. 10 11
104 541.75 humidity 60 720 > th dose dependent rect. 13 12
196 544.55 humidity 80 1440 < th dose dependent rect. 23 15
217 544.95 humidity 90 720 < th dose dependent sin 19 NA
230 545.34 humidity 80 1440 > th dose independent rect. 8 7
236 545.49 humidity 80 1440 > th dose independent rect. 7 9
258 546.24 humidity 80 720 < th dose independent sin 20 NA
263 546.35 humidity 80 1440 < th dose dependent sin 3 NA
266 546.48 humidity 80 720 > th dose independent sin 20 NA
270 546.54 humidity 80 1440 < th dose independent sin 1 NA
278 546.68 humidity 80 1440 < th dose dependent rect. 18 20
310 547.23 humidity 80 720 > th dose independent rect. 8 13
311 547.23 humidity 80 720 > th dose independent rect. 8 17
339 547.61 humidity 60 720 > th dose dependent rect. 14 6
340 547.63 humidity 80 1440 > th dose independent rect. 9 5
356 547.80 humidity 60 720 > th dose dependent rect. 15 4
367 548.00 humidity 70 1440 > th dose independent rect. 9 21
404 548.53 humidity 70 720 > th dose independent rect. 14 5
481 549.56 humidity 70 720 > th dose independent rect. 14 21
483 549.58 humidity 70 1440 > th dose independent rect. 18 22
496 549.77 humidity 70 1440 > th dose independent rect. 18 20
630 551.43 humidity 70 1440 > th dose independent rect. 15 23
638 551.48 humidity 80 1440 > th dose independent sin 1 NA
750 552.24 humidity 70 1440 > th dose independent rect. 13 23
791 552.56 humidity 70 1440 > th dose independent rect. 2 19
793 552.58 humidity 70 1440 > th dose independent rect. 5 16
833 552.68 humidity 70 1440 > th dose independent rect. 5 23
840 552.70 humidity 70 1440 > th dose independent no NA NA