BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0229800 Os07g0229800|AK065591
(254 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0229800 NAD-dependent glycerol-3-phosphate dehydrogena... 492 e-139
Os01g0971600 Similar to Sn-glycerol-3-phosphate dehydrogena... 87 9e-18
>Os07g0229800 NAD-dependent glycerol-3-phosphate dehydrogenase family protein
Length = 254
Score = 492 bits (1266), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/254 (96%), Positives = 244/254 (96%)
Query: 1 MLSQFSSSFLEGISTHVDPKLPFISLSKGLELNTLRTMSQIIPQALGNPRQPFIVLSGPS 60
MLSQFSSSFLEGISTHVDPKLPFISLSKGLELNTLRTMSQIIPQALGNPRQPFIVLSGPS
Sbjct: 1 MLSQFSSSFLEGISTHVDPKLPFISLSKGLELNTLRTMSQIIPQALGNPRQPFIVLSGPS 60
Query: 61 FAIELMNKLPTAMVVASKDKKXXXXXXXXXXSPNLRISTSNDVTGVEIAGALKNVLAIAA 120
FAIELMNKLPTAMVVASKDKK SPNLRISTSNDVTGVEIAGALKNVLAIAA
Sbjct: 61 FAIELMNKLPTAMVVASKDKKLAAAVQQLLASPNLRISTSNDVTGVEIAGALKNVLAIAA 120
Query: 121 GIVEGMHLGNNCMAALVAQGCSEIRWLATKMGAKPTTLSGLSGSGDIMLTCFVNLSRNRN 180
GIVEGMHLGNNCMAALVAQGCSEIRWLATKMGAKPTTLSGLSGSGDIMLTCFVNLSRNRN
Sbjct: 121 GIVEGMHLGNNCMAALVAQGCSEIRWLATKMGAKPTTLSGLSGSGDIMLTCFVNLSRNRN 180
Query: 181 VGLRLGSGEKLDEIMNSMNQVAEGVSTAGAVIALAQKYHVKMPVLTAVARIIDNELTPKK 240
VGLRLGSGEKLDEIMNSMNQVAEGVSTAGAVIALAQKYHVKMPVLTAVARIIDNELTPKK
Sbjct: 181 VGLRLGSGEKLDEIMNSMNQVAEGVSTAGAVIALAQKYHVKMPVLTAVARIIDNELTPKK 240
Query: 241 AVMELMNLPQVEEV 254
AVMELMNLPQVEEV
Sbjct: 241 AVMELMNLPQVEEV 254
>Os01g0971600 Similar to Sn-glycerol-3-phosphate dehydrogenase (Fragment)
Length = 351
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 117/250 (46%), Gaps = 21/250 (8%)
Query: 9 FLEGISTHVDPKL----PFISLSKGLELNTLR--TMSQIIPQALGNPRQPFIVLSGPSFA 62
F+EGI + KL ISL KG+E+ +S++I LG VL G + A
Sbjct: 102 FVEGICKKLVGKLRPGTEGISLIKGMEVKMEGPCMISKLITNILG---INCCVLMGANIA 158
Query: 63 IEL-MNKLPTAMVVASKDKKXXXXXXXXXXSPNLRISTSNDVTGVEIAGALKNVLAIAAG 121
E+ + K A + KDK+ +P +S D+ GVE+ G LKNV+AIAAG
Sbjct: 159 NEIAVEKFSEATIGYKKDKEVATRWAKLFTTPYFLVSVVEDIEGVELCGTLKNVVAIAAG 218
Query: 122 IVEGMHLGNNCMAALVAQGCSEIRWLATKMG--AKPTTLSGLSGSGDIMLTCFVNLSRNR 179
+V+G+ +GNN AA++ G E+R + + + T G D++ TC RNR
Sbjct: 219 LVDGLDMGNNTKAAIMRIGLREMRAFSKLLSPTVRDNTFFESCGVADLITTCLG--GRNR 276
Query: 180 NVG---LRLGSGEKLDEIMNSM--NQVAEGVSTAGAVIAL--AQKYHVKMPVLTAVARII 232
V R G DE+ M Q +GVSTA V + + + P+L+ V I
Sbjct: 277 RVAEAFARNGGKRSFDELEAEMLHGQKLQGVSTAKEVYEVLTYRGWQELFPLLSTVHEIC 336
Query: 233 DNELTPKKAV 242
+L P V
Sbjct: 337 IGQLPPTSIV 346
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,227,035
Number of extensions: 260741
Number of successful extensions: 581
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 2
Length of query: 254
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 155
Effective length of database: 11,866,615
Effective search space: 1839325325
Effective search space used: 1839325325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)