FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0971600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Sn-glycerol-3-phosphate dehydrogenase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.07 (0.0309) R2 : 0.696
β1 : -1.45 (0.116) R2dD : 0.12 R2D : -0.00907
β2 : 1.94 (0.0753) R2dC : 0.441 R2C : 0.449
β3 : 1.33 (0.1) R2dE : 0.133 R2E : 0.0851
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.565 (0.0658) R2dN8 : 0.0685 R2N8 : 0.0259
σ : 0.576
deviance : 153.08
__
_____
C
peak time of C : 21.8
E
wheather : temperature
threshold : 27.53
memory length : 1699
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
151.83 0.579 5.9 -0.55 1.93 0.756 -0.556 5.82 -0.355 21.7 29.03 1723 -- --
155.75 0.581 6.03 -1.49 1.89 1.2 -0.549 -- -0.521 21.5 27.73 2570 -- --
152.98 0.576 5.91 -0.58 1.93 0.782 -- 5.51 -0.357 21.7 29 1713 -- --
153.08 0.576 6.07 -1.45 1.94 1.33 -- -- -0.565 21.8 27.53 1699 -- --
280.1 0.779 6.02 -1.67 -- 2.52 -- 1.29 -0.783 -- 24.12 790 -- --
215.72 0.689 6.05 -1.14 2 -- -0.425 -- -0.578 21.7 -- -- -- --
216.41 0.689 6.05 -1.12 2 -- -- -- -0.577 21.7 -- -- -- --
276.23 0.774 6.05 -1.7 -- 2.5 -- -- -0.854 -- 24.1 790 -- --
207.49 0.671 5.98 -- 1.93 1.16 -- -- -0.286 21.7 28.99 1740 -- --
454.08 0.996 5.99 -1.1 -- -- -- -- -0.579 -- -- -- -- --
249.47 0.739 6.02 -- 2 -- -- -- -0.452 21.7 -- -- -- --
347.34 0.868 6 -- -- 2.16 -- -- -0.616 -- 24.4 769 -- --
486.07 1.03 5.96 -- -- -- -- -- -0.457 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 139.57 temperature 10.0 270 > th dose dependent rect. 1 17
14 145.91 temperature 10.0 270 > th dose dependent rect. 11 8
18 146.77 temperature 10.0 270 > th dose dependent rect. 12 18
21 147.38 temperature 10.0 10 > th dose dependent rect. 3 17
24 147.66 temperature 10.0 270 > th dose dependent rect. 11 20
25 147.81 temperature 30.0 270 < th dose independent rect. 6 19
27 147.93 temperature 30.0 270 < th dose independent rect. 7 17
43 149.30 wind 9.0 43200 > th dose dependent rect. 19 13
57 150.04 wind 9.0 43200 > th dose independent rect. 19 14
72 150.76 wind 9.0 43200 < th dose independent rect. 18 17
79 151.05 temperature 30.0 270 < th dose independent rect. 6 6
81 151.15 wind 9.0 43200 < th dose independent rect. 19 14
82 151.15 temperature 30.0 90 < th dose independent rect. 9 18
86 151.46 temperature 30.0 270 < th dose independent rect. 17 19
89 151.56 radiation 20.0 270 < th dose dependent rect. 15 10
98 151.96 wind 9.0 43200 > th dose independent rect. 18 17
132 152.83 temperature 30.0 270 < th dose dependent rect. 6 19
136 153.01 temperature 30.0 1440 < th dose independent rect. 9 2
143 153.15 temperature 30.0 1440 > th dose independent rect. 9 3
159 153.48 temperature 30.0 1440 < th dose independent rect. 18 17
161 153.49 temperature 30.0 1440 > th dose dependent rect. 10 5
164 153.51 temperature 30.0 1440 > th dose dependent rect. 18 20
185 153.57 temperature 30.0 1440 < th dose independent sin 9 NA
191 153.60 wind 7.0 43200 < th dose independent rect. 6 1
215 153.71 temperature 30.0 1440 > th dose dependent sin 5 NA
217 153.72 temperature 30.0 1440 < th dose independent rect. 4 7
218 153.72 temperature 30.0 1440 < th dose independent rect. 2 9
231 153.78 radiation 20.0 1440 > th dose independent rect. 16 1
245 153.78 temperature 30.0 1440 < th dose independent rect. 17 21
250 153.80 temperature 30.0 1440 > th dose independent rect. 18 19
255 153.81 temperature 30.0 1440 < th dose independent rect. 22 14
291 153.88 temperature 30.0 1440 < th dose independent rect. 6 6
298 153.90 temperature 30.0 1440 > th dose independent rect. 16 20
315 153.96 temperature 30.0 270 < th dose independent rect. 17 8
328 154.03 temperature 25.0 1440 > th dose dependent rect. 6 13
455 154.25 wind 9.0 43200 > th dose independent sin 10 NA
538 154.47 temperature 30.0 1440 > th dose independent sin 8 NA
545 154.48 temperature 30.0 1440 > th dose dependent no NA NA
688 154.54 radiation 10.0 270 < th dose independent rect. 16 9
699 154.57 wind 7.0 43200 > th dose independent rect. 6 1
703 154.57 temperature 25.0 1440 > th dose dependent rect. 13 23
774 154.74 wind 9.0 43200 > th dose dependent rect. 17 15
778 154.75 atmosphere 995.0 270 > th dose independent rect. 17 8
814 154.87 precipitation 0.1 270 < th dose independent rect. 12 18
818 154.87 precipitation 0.1 270 < th dose dependent rect. 12 18
843 154.96 humidity 50.0 14400 < th dose independent rect. 17 1
860 154.98 temperature 30.0 1440 > th dose independent rect. 9 10
889 155.04 temperature 25.0 1440 > th dose dependent rect. 17 2
890 155.04 temperature 25.0 1440 > th dose dependent rect. 6 3
961 155.20 temperature 30.0 1440 > th dose independent no NA NA