BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0971600 Os01g0971600|AK070366
(351 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G40610.1 | chr5:16265071-16267258 REVERSE LENGTH=401 568 e-162
AT2G40690.1 | chr2:16974107-16976241 FORWARD LENGTH=421 135 4e-32
AT2G41540.1 | chr2:17326801-17328654 FORWARD LENGTH=463 59 4e-09
>AT5G40610.1 | chr5:16265071-16267258 REVERSE LENGTH=401
Length = 400
Score = 568 bits (1463), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/347 (76%), Positives = 307/347 (88%)
Query: 3 NGHAKNLVAVIGSGNWGSVASRLIASNTAKLPSFHDEVRMWVFEEILPTGKKLSESINQA 62
N +K+ V V+GSGNWGSVA++LIASN KLPSFHDEVRMWVFEE+LP G+KL++ IN+
Sbjct: 50 NDDSKSKVTVVGSGNWGSVAAKLIASNALKLPSFHDEVRMWVFEEVLPNGEKLNDVINKT 109
Query: 63 NENCKYLPGIKLGANVIADPDLENAVKDANMLVFVTPHQFVEGICKKLVGKLRPGTEGIS 122
NEN KYLPGIKLG NV+ADPDLENAVKDANMLVFVTPHQF++GICKKL GK+ E IS
Sbjct: 110 NENVKYLPGIKLGRNVVADPDLENAVKDANMLVFVTPHQFMDGICKKLDGKITGDVEAIS 169
Query: 123 LIKGMEVKMEGPCMISKLITNILGINCCVLMGANIANEIAVEKFSEATIGYKKDKEVATR 182
L+KGMEVK EGPCMIS LI+ LGINCCVLMGANIANEIAVEKFSEAT+GY+ +E+A
Sbjct: 170 LVKGMEVKKEGPCMISSLISKQLGINCCVLMGANIANEIAVEKFSEATVGYRGSREIADT 229
Query: 183 WAKLFTTPYFLVSVVEDIEGVELCGTLKNVVAIAAGLVDGLDMGNNTKAAIMRIGLREMR 242
W +LF+TPYF+V+ V D+EGVELCGTLKNVVAIAAG VDGL+MGNNTKAAIMRIGLREM+
Sbjct: 230 WVQLFSTPYFMVTPVHDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMK 289
Query: 243 AFSKLLSPTVRDNTFFESCGVADLITTCLGGRNRRVAEAFARNGGKRSFDELEAEMLHGQ 302
A SKLL P+V+D+TFFESCGVAD+ITTCLGGRNRRVAEAFA++ GKRSFDELEAEML GQ
Sbjct: 290 ALSKLLFPSVKDSTFFESCGVADVITTCLGGRNRRVAEAFAKSRGKRSFDELEAEMLQGQ 349
Query: 303 KLQGVSTAKEVYEVLTYRGWQELFPLLSTVHEICIGQLPPTSIVEYR 349
KLQGVSTA+EVYEVL + GW E+FPL STVH+IC G+L P +IV+YR
Sbjct: 350 KLQGVSTAREVYEVLKHCGWLEMFPLFSTVHQICTGRLQPEAIVQYR 396
>AT2G40690.1 | chr2:16974107-16976241 FORWARD LENGTH=421
Length = 420
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 168/342 (49%), Gaps = 28/342 (8%)
Query: 10 VAVIGSGNWGSVASRLIASNTAKLPSFHDEVRMWVFEEILPTGKKLSESINQANENCKYL 69
V V+G G++G+ + +A L EV M V + + +SIN+ + NCKY
Sbjct: 90 VVVLGGGSFGTAMAAHVARRKEGL-----EVNMLVRDSFV------CQSINENHHNCKYF 138
Query: 70 PGIKLGANVIADPDLENAVKDANMLVFVTPHQFVEGICKKLVGKLRPGTEGISLIKGMEV 129
P KL NVIA D + A+ DA+ + P QF + + + PG ISL KG+E+
Sbjct: 139 PEHKLPENVIATTDAKAALLDADYCLHAVPVQFSSSFLEGIADYVDPGLPFISLSKGLEL 198
Query: 130 KMEGPCMISKLITNILG---INCCVLMGANIANEIAVEKFSEATIGYKKDKEVATRWAKL 186
M+S++I L L G + A E+ + A + KDK++A +L
Sbjct: 199 NTLR--MMSQIIPIALKNPRQPFVALSGPSFALEL-MNNLPTAMVVASKDKKLANAVQQL 255
Query: 187 FTTPYFLVSVVEDIEGVELCGTLKNVVAIAAGLVDGLDMGNNTKAAIMRIGLREMRAFSK 246
+ Y ++ D+ GVE+ G LKNV+AIAAG+VDG+++GNN+ AA++ G E+R +
Sbjct: 256 LASSYLRINTSSDVTGVEIAGALKNVLAIAAGIVDGMNLGNNSMAALVSQGCSEIRWLAT 315
Query: 247 LLSPTVRDNTFFESCGVADLITTCLG--GRNRRVAEAFARNGGKRSFDELEAEMLHGQKL 304
+ + T G D++ TC RNR V R G + D++ M Q
Sbjct: 316 KMG--AKPTTITGLSGTGDIMLTCFVNLSRNRTVG---VRLGSGETLDDILTSM--NQVA 368
Query: 305 QGVSTAKEVYEVLTYRGWQELFPLLSTVHEICIGQLPPTSIV 346
+GV+TA V + + + P+L+ V +I +L PT V
Sbjct: 369 EGVATAGAV--IALAQKYNVKLPVLTAVAKIIDNELTPTKAV 408
>AT2G41540.1 | chr2:17326801-17328654 FORWARD LENGTH=463
Length = 462
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 149/361 (41%), Gaps = 76/361 (21%)
Query: 10 VAVIGSGNWGSVASRLIASNTAKLPSFHD--EVRMW------VFEEILPTGKKLSESINQ 61
+ +G+G WGSV + L+ + F D ++R+W V E T + L E IN
Sbjct: 44 IVSVGAGAWGSVFAALLQESYG---GFRDKFQIRIWRRAGRAVDRE---TAEHLFEVINS 97
Query: 62 ANE-------NCKYLPGI--KLGA---------------NVIADP--------DLENAVK 89
+ C YL + +LG N++ P +L+ AV
Sbjct: 98 REDILRRLIRRCAYLKYVEARLGDRTLYADEILKDGFCLNMVDTPLCPLKVVTNLQEAVW 157
Query: 90 DANMLVFVTP----HQFVEGICKKLVGKLRPGTEGISLIKGMEVKMEG-PCMIS--KLIT 142
DA+++V P + E I K ++ ISL KG+E +E P +I+ K+I
Sbjct: 158 DADIVVNGLPSTETREVFEEISKYWKERITVPII-ISLSKGIETALEPVPHIITPTKMIH 216
Query: 143 NILGI---NCCVLMGANIANEIAVEKFSEATIGYKKDKEVATRW----AKLFTTPYFLVS 195
G+ N L G NIA EI ++++ A I A +W AK P+F+V
Sbjct: 217 QATGVPIDNVLYLGGPNIAAEIYNKEYANARIC------GAAKWRKPLAKFLRQPHFIVW 270
Query: 196 VVEDIEGVELCGTLKNVVAIAAGLVDGL-DMGNNTKAAIMRIGLREMRAFSKLLSPTVRD 254
D+ E+ G LKNV AI AG+V L + +K+ EM + LL+ +
Sbjct: 271 DNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLA---EE 327
Query: 255 NTFFESCGVADLITTCLGGRNRRVAEAFARNGGKRSF-DELEAEMLHGQKLQGVSTAKEV 313
+AD T L GRN + A+ R D + + + +QGVS
Sbjct: 328 PEKLAGPLLADTYVTLLKGRNAWYGQMLAKGEINRDMGDSISGKGM----IQGVSAVGAF 383
Query: 314 Y 314
Y
Sbjct: 384 Y 384
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,400,324
Number of extensions: 301458
Number of successful extensions: 708
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 707
Number of HSP's successfully gapped: 3
Length of query: 351
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,364,969
Effective search space: 2099607219
Effective search space used: 2099607219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)