Os07g0229800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NAD-dependent glycerol-3-phosphate dehydrogenase family protein.
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Os07g0229800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NAD-dependent glycerol-3-phosphate dehydrogenase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.06 | 0.486 | 10.8 | -1.04 | 2.34 | 1.37 | -1.46 | -1.63 | -0.029 | 19.1 | 7.614 | 30 | 23.1 | -- |
| 112.41 | 0.494 | 10.8 | -0.993 | 2.3 | 1.31 | -1.03 | -- | -0.0411 | 19.2 | 7.174 | 23 | 23.1 | -- |
| 111.71 | 0.492 | 10.8 | -1.01 | 2.36 | 1.46 | -- | -1.11 | -0.0324 | 18.9 | 8.07 | 23 | 23.6 | -- |
| 114.96 | 0.499 | 10.8 | -0.975 | 2.36 | 1.44 | -- | -- | -0.0306 | 18.9 | 7.881 | 23 | 23.6 | -- |
| 282.13 | 0.787 | 10.8 | -0.904 | -- | 1.02 | -- | -0.865 | -0.0705 | -- | 0.2254 | 3 | 3.66 | -- |
| 141.91 | 0.558 | 10.8 | -0.996 | 1.95 | -- | -1.37 | -- | -0.117 | 20.9 | -- | -- | -- | -- |
| 148.28 | 0.57 | 10.8 | -0.949 | 1.96 | -- | -- | -- | -0.116 | 20.8 | -- | -- | -- | -- |
| 148.42 | 0.567 | 10.8 | -0.949 | -- | -2.01 | -- | -- | -0.141 | -- | 98.73 | 588 | 1.55 | -- |
| 139.87 | 0.551 | 10.8 | -- | 2.34 | 1.41 | -- | -- | 0.0724 | 18.9 | 7.117 | 24 | 23.7 | -- |
| 366.87 | 0.895 | 10.8 | -0.95 | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
| 172.04 | 0.614 | 10.8 | -- | 1.96 | -- | -- | -- | -0.0101 | 20.8 | -- | -- | -- | -- |
| 171.77 | 0.61 | 10.8 | -- | -- | -1.96 | -- | -- | -0.0148 | -- | 305.8 | 467 | 0.893 | -- |
| 390.69 | 0.923 | 10.8 | -- | -- | -- | -- | -- | -0.0247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.76 | radiation | 10.0 | 30 | < th | dose dependent | sin | 6 | NA |
| 6 | 109.73 | temperature | 25.0 | 270 | < th | dose independent | rect. | 4 | 7 |
| 9 | 110.40 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 7 |
| 22 | 112.82 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 1 | 13 |
| 28 | 113.03 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 1 | 16 |
| 34 | 113.38 | radiation | 1.0 | 90 | < th | dose independent | sin | 6 | NA |
| 35 | 113.39 | radiation | 1.0 | 90 | > th | dose independent | sin | 6 | NA |
| 46 | 113.77 | radiation | 1.0 | 30 | < th | dose independent | sin | 4 | NA |
| 47 | 113.78 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 48 | 113.82 | radiation | 1.0 | 30 | > th | dose independent | sin | 4 | NA |
| 73 | 114.78 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 20 |
| 80 | 115.01 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 1 | 11 |
| 87 | 115.11 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 102 | 115.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 105 | 115.41 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 17 |
| 130 | 115.91 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 135 | 116.01 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 15 |
| 145 | 116.26 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 13 |
| 151 | 116.34 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 172 | 116.60 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 20 |
| 197 | 116.91 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 216 | 117.07 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 20 |
| 247 | 117.45 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 7 |
| 340 | 118.18 | temperature | 20.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 379 | 118.42 | temperature | 25.0 | 270 | < th | dose independent | rect. | 4 | 17 |
| 418 | 118.84 | temperature | 30.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 436 | 118.91 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 478 | 119.19 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 7 |
| 504 | 119.38 | radiation | 1.0 | 10 | > th | dose dependent | sin | 9 | NA |
| 543 | 119.57 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 18 |
| 548 | 119.58 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 2 |
| 552 | 119.61 | temperature | 25.0 | 270 | > th | dose independent | rect. | 24 | 15 |
| 564 | 119.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 4 |
| 565 | 119.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 566 | 119.71 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 567 | 119.71 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 568 | 119.71 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 571 | 119.71 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 572 | 119.71 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 578 | 119.71 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 20 |
| 579 | 119.71 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 585 | 119.72 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 588 | 119.72 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 24 | 5 |
| 591 | 119.75 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 24 | 17 |
| 601 | 119.82 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 602 | 119.82 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 24 | 15 |
| 611 | 119.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 20 |
| 618 | 119.91 | humidity | 80.0 | 90 | > th | dose independent | rect. | 1 | 4 |
| 623 | 119.93 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 1 | 4 |
| 630 | 119.97 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 24 | 5 |
| 635 | 120.00 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 7 |
| 650 | 120.04 | wind | 9.0 | 90 | < th | dose independent | rect. | 1 | 4 |
| 651 | 120.04 | temperature | 10.0 | 90 | > th | dose independent | rect. | 1 | 4 |
| 653 | 120.04 | temperature | 30.0 | 90 | < th | dose independent | rect. | 1 | 4 |
| 654 | 120.04 | humidity | 50.0 | 90 | > th | dose independent | rect. | 1 | 4 |
| 657 | 120.04 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 1 | 4 |
| 658 | 120.04 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 1 | 4 |
| 660 | 120.04 | radiation | 20.0 | 90 | < th | dose independent | rect. | 1 | 4 |
| 674 | 120.04 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 20 |
| 677 | 120.05 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 1 | 4 |
| 684 | 120.07 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 7 |
| 695 | 120.09 | temperature | 10.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 714 | 120.12 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 1 | 4 |
| 718 | 120.12 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 1 | 4 |
| 789 | 120.31 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 795 | 120.35 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 20 |
| 798 | 120.35 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 802 | 120.38 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 823 | 120.52 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 20 |
| 824 | 120.52 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 843 | 120.63 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 860 | 120.72 | radiation | 40.0 | 90 | < th | dose independent | rect. | 11 | 18 |
| 878 | 120.74 | wind | 9.0 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 889 | 120.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 2 |
| 890 | 120.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 2 |
| 892 | 120.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 2 |
| 894 | 120.80 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 2 |
| 895 | 120.80 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 2 |
| 898 | 120.80 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 2 |
| 899 | 120.80 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 24 | 2 |
| 901 | 120.80 | radiation | 1.0 | 270 | < th | dose independent | rect. | 24 | 2 |
| 908 | 120.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 22 |
| 909 | 120.80 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 24 | 2 |
| 916 | 120.81 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 2 |
| 959 | 120.99 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 999 | 121.17 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 2 |