BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0206900 Os07g0206900|AK107761
         (84 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0206900  Protein of unknown function DUF642 family protein   107   2e-24
Os03g0807700  Glutelin family protein                              77   2e-15

>Os07g0206900 Protein of unknown function DUF642 family protein
          Length = 84

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 34 ARQASLRFVASGRRARVTFYSSYYHTSAGDGVSPCGPVLDQVKVQPLMTKA 84
          ARQASLRFVASGRRARVTFYSSYYHTSAGDGVSPCGPVLDQVKVQPLMTKA
Sbjct: 34 ARQASLRFVASGRRARVTFYSSYYHTSAGDGVSPCGPVLDQVKVQPLMTKA 84



>Os03g0807700 Glutelin family protein
          Length = 393

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 38/46 (82%)

Query: 35  RQASLRFVASGRRARVTFYSSYYHTSAGDGVSPCGPVLDQVKVQPL 80
           + AS RFVA+G R RVTFYSSYYHT   DGVS CGPVLDQVKVQPL
Sbjct: 346 KPASFRFVAAGVRTRVTFYSSYYHTKVSDGVSLCGPVLDQVKVQPL 391



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,630,012
Number of extensions: 43389
Number of successful extensions: 97
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 2
Length of query: 84
Length of database: 17,035,801
Length adjustment: 54
Effective length of query: 30
Effective length of database: 14,216,245
Effective search space: 426487350
Effective search space used: 426487350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)