BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0204400 Os07g0204400|009-062-D09
         (64 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0204400  Conserved hypothetical protein                      132   4e-32
Os03g0806800  Conserved hypothetical protein                      121   9e-29
Os07g0572400  Conserved hypothetical protein                       77   3e-15

>Os07g0204400 Conserved hypothetical protein
          Length = 64

 Score =  132 bits (333), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/64 (100%), Positives = 64/64 (100%)

Query: 1  MGWLHSLFSPLRRLWVCAHSERRNRRGMYILYKDVQSCQDEDVHVLWSILIDSHRHPALM 60
          MGWLHSLFSPLRRLWVCAHSERRNRRGMYILYKDVQSCQDEDVHVLWSILIDSHRHPALM
Sbjct: 1  MGWLHSLFSPLRRLWVCAHSERRNRRGMYILYKDVQSCQDEDVHVLWSILIDSHRHPALM 60

Query: 61 KLKL 64
          KLKL
Sbjct: 61 KLKL 64



>Os03g0806800 Conserved hypothetical protein
          Length = 64

 Score =  121 bits (304), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 62/64 (96%)

Query: 1  MGWLHSLFSPLRRLWVCAHSERRNRRGMYILYKDVQSCQDEDVHVLWSILIDSHRHPALM 60
          MGWLHSLFSPLR+LWV AHS RRNRRGM+ILYKDV+SCQDEDVHVLWSIL+DSHRHPALM
Sbjct: 1  MGWLHSLFSPLRKLWVRAHSARRNRRGMHILYKDVKSCQDEDVHVLWSILVDSHRHPALM 60

Query: 61 KLKL 64
          KLKL
Sbjct: 61 KLKL 64



>Os07g0572400 Conserved hypothetical protein
          Length = 90

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 44/53 (83%)

Query: 1  MGWLHSLFSPLRRLWVCAHSERRNRRGMYILYKDVQSCQDEDVHVLWSILIDS 53
          MGWL SL +PL++LW+  HS +R +RG+YILY+DV+SC  EDV +LWSIL++S
Sbjct: 20 MGWLQSLLAPLKKLWIRMHSAQRKKRGIYILYEDVKSCPCEDVQILWSILVES 72



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.139    0.480 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,457,312
Number of extensions: 77702
Number of successful extensions: 172
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 3
Length of query: 64
Length of database: 17,035,801
Length adjustment: 36
Effective length of query: 28
Effective length of database: 15,156,097
Effective search space: 424370716
Effective search space used: 424370716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 149 (62.0 bits)