BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0201100 Os07g0201100|AK100095
(889 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0201100 Similar to Coatomer gamma subunit (Gamma-coat ... 1698 0.0
Os03g0227000 Similar to Coatomer gamma subunit (Gamma-coat ... 1465 0.0
AK111169 688 0.0
AK110014 633 0.0
>Os07g0201100 Similar to Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
Length = 889
Score = 1698 bits (4398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 839/889 (94%), Positives = 839/889 (94%)
Query: 1 MAQPXXXXXXXXXXXXXXXSPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQ 60
MAQP SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQ
Sbjct: 1 MAQPLVVKKDDDLDEEEYYSPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQ 60
Query: 61 GDTFTKVEATEVFFATTKLFQSKDAGLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKT 120
GDTFTKVEATEVFFATTKLFQSKDAGLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKT
Sbjct: 61 GDTFTKVEATEVFFATTKLFQSKDAGLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKT 120
Query: 121 DMYRANAIRVLCRIIDSTLLTQIERYLKQAIVDKNPVVASAALVSGIYLLQTSPEVVKRW 180
DMYRANAIRVLCRIIDSTLLTQIERYLKQAIVDKNPVVASAALVSGIYLLQTSPEVVKRW
Sbjct: 121 DMYRANAIRVLCRIIDSTLLTQIERYLKQAIVDKNPVVASAALVSGIYLLQTSPEVVKRW 180
Query: 181 SNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTS 240
SNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTS
Sbjct: 181 SNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTS 240
Query: 241 QVIRESSMNSQGGDRPFFDFLESCLRNKAEMVILEAARAITELNGVTSRELTPAITVLQL 300
QVIRESSMNSQGGDRPFFDFLESCLRNKAEMVILEAARAITELNGVTSRELTPAITVLQL
Sbjct: 241 QVIRESSMNSQGGDRPFFDFLESCLRNKAEMVILEAARAITELNGVTSRELTPAITVLQL 300
Query: 301 FLSSSKPVLRFAAVRTLNKVASTHPLAVTNCNIDMESLISDQNRSXXXXXXXXXXKTGNE 360
FLSSSKPVLRFAAVRTLNKVASTHPLAVTNCNIDMESLISDQNRS KTGNE
Sbjct: 301 FLSSSKPVLRFAAVRTLNKVASTHPLAVTNCNIDMESLISDQNRSIATLAITTLLKTGNE 360
Query: 361 SSVDRLMKQMTNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYK 420
SSVDRLMKQMTNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYK
Sbjct: 361 SSVDRLMKQMTNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYK 420
Query: 421 KAXXXXXXXXXXXXXXAKESGLFHLCEFIEDCEFTYMSTQILHFLGNEGPKTSDPSKYIR 480
KA AKESGLFHLCEFIEDCEFTYMSTQILHFLGNEGPKTSDPSKYIR
Sbjct: 421 KAIVDSIIILIRDIPDAKESGLFHLCEFIEDCEFTYMSTQILHFLGNEGPKTSDPSKYIR 480
Query: 481 YIYNRVILENATVRASAVSTLAKFGALVDSLKPRIFVLLRRCLFDGDDEVRDRATLYLKL 540
YIYNRVILENATVRASAVSTLAKFGALVDSLKPRIFVLLRRCLFDGDDEVRDRATLYLKL
Sbjct: 481 YIYNRVILENATVRASAVSTLAKFGALVDSLKPRIFVLLRRCLFDGDDEVRDRATLYLKL 540
Query: 541 LGGEATVGETEKDVNEFLFGSFDIPLVNLETSLQNYEPSEAPFDISSVSLETKSQPLAEX 600
LGGEATVGETEKDVNEFLFGSFDIPLVNLETSLQNYEPSEAPFDISSVSLETKSQPLAE
Sbjct: 541 LGGEATVGETEKDVNEFLFGSFDIPLVNLETSLQNYEPSEAPFDISSVSLETKSQPLAEK 600
Query: 601 XXXXXXXXXXASALSGPVPTVDASYEKLLSSIPEFAGFGKLFKSSAPVELTEAETEYSVN 660
ASALSGPVPTVDASYEKLLSSIPEFAGFGKLFKSSAPVELTEAETEYSVN
Sbjct: 601 KTTGKKPTGPASALSGPVPTVDASYEKLLSSIPEFAGFGKLFKSSAPVELTEAETEYSVN 660
Query: 661 VVKHIYDGHVVLQYNCTNTIPEQLLEEVVVFVDASEADEFSEVATKSLRSLPYDSPGQTF 720
VVKHIYDGHVVLQYNCTNTIPEQLLEEVVVFVDASEADEFSEVATKSLRSLPYDSPGQTF
Sbjct: 661 VVKHIYDGHVVLQYNCTNTIPEQLLEEVVVFVDASEADEFSEVATKSLRSLPYDSPGQTF 720
Query: 721 VAFEKLEGVLATGKFSNILKFIVKEVDPSTGEADDDGVEDEYQLEDLEITSADYMLKVGV 780
VAFEKLEGVLATGKFSNILKFIVKEVDPSTGEADDDGVEDEYQLEDLEITSADYMLKVGV
Sbjct: 721 VAFEKLEGVLATGKFSNILKFIVKEVDPSTGEADDDGVEDEYQLEDLEITSADYMLKVGV 780
Query: 781 SNFRNAWESMDPESERVDEYGLGARESLAEAVSAVIGILGMQPCEGTDVVPSNSRSHTCL 840
SNFRNAWESMDPESERVDEYGLGARESLAEAVSAVIGILGMQPCEGTDVVPSNSRSHTCL
Sbjct: 781 SNFRNAWESMDPESERVDEYGLGARESLAEAVSAVIGILGMQPCEGTDVVPSNSRSHTCL 840
Query: 841 LSGVFIGNVKVLVRLSFGLSGPKEVAMKLAVRSDDPEISDKIHEIVANG 889
LSGVFIGNVKVLVRLSFGLSGPKEVAMKLAVRSDDPEISDKIHEIVANG
Sbjct: 841 LSGVFIGNVKVLVRLSFGLSGPKEVAMKLAVRSDDPEISDKIHEIVANG 889
>Os03g0227000 Similar to Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)
Length = 897
Score = 1465 bits (3792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 722/870 (82%), Positives = 774/870 (88%), Gaps = 3/870 (0%)
Query: 20 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 79
SPF GIEKGAVLQEAR FHDPQLDAR+C QVITKLLYLLNQG+TFTKVEATEVFFA TKL
Sbjct: 31 SPFYGIEKGAVLQEARAFHDPQLDARKCSQVITKLLYLLNQGETFTKVEATEVFFAVTKL 90
Query: 80 FQSKDAGLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRIIDSTL 139
FQSKDAGLRR+VYLMIKELSPS+DEVIIVTSSLMKDMNSKTDMYRANAIRVLCRIID TL
Sbjct: 91 FQSKDAGLRRLVYLMIKELSPSSDEVIIVTSSLMKDMNSKTDMYRANAIRVLCRIIDGTL 150
Query: 140 LTQIERYLKQAIVDKNPVVASAALVSGIYLLQTSPEVVKRWSNEVQEAVQSRAALVQFHA 199
LTQIERYLKQAIVDKNPVVASAALVSGI+LLQ +PE+VKRWSNEVQEAVQSR ALVQFH
Sbjct: 151 LTQIERYLKQAIVDKNPVVASAALVSGIHLLQANPEIVKRWSNEVQEAVQSRFALVQFHG 210
Query: 200 LALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTSQVIRESSMNSQGGDRPFFD 259
LALLHQIRQNDRLA+SK+V+ LTRGSVRSPLAQCLLIRYTSQVIRESSMN+Q DRPFFD
Sbjct: 211 LALLHQIRQNDRLAISKMVSGLTRGSVRSPLAQCLLIRYTSQVIRESSMNTQTSDRPFFD 270
Query: 260 FLESCLRNKAEMVILEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNK 319
+LESCLR+K+EMVILEAAR I E++ VTSREL PAITVLQLFLSSSKPVLRFAAVRTLNK
Sbjct: 271 YLESCLRHKSEMVILEAARKIAEMD-VTSRELAPAITVLQLFLSSSKPVLRFAAVRTLNK 329
Query: 320 VASTHPLAVTNCNIDMESLISDQNRSXXXXXXXXXXKTGNESSVDRLMKQMTNFMSDIAD 379
VA T PLAVTNCN+D+ESL+SDQNRS KTGNESSVDRLMKQ+TNFMSDIAD
Sbjct: 330 VAMTRPLAVTNCNVDLESLMSDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIAD 389
Query: 380 EFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAXXXXXXXXXXXXXXAKE 439
EFKIVVVEAIRSLCLKFPLKYRS+MNFLSN LREEGGFEYKKA AKE
Sbjct: 390 EFKIVVVEAIRSLCLKFPLKYRSMMNFLSNSLREEGGFEYKKAIVDSIVTLISEIPDAKE 449
Query: 440 SGLFHLCEFIEDCEFTYMSTQILHFLGNEGPKTSDPSKYIRYIYNRVILENATVRASAVS 499
GL +LCEFIEDCEFTY+S+QILH LGNEGP+TSDPS+YIRYIYNRVILENATVRASAVS
Sbjct: 450 IGLLYLCEFIEDCEFTYLSSQILHLLGNEGPRTSDPSRYIRYIYNRVILENATVRASAVS 509
Query: 500 TLAKFGALVDSLKPRIFVLLRRCLFDGDDEVRDRATLYLKLLGGEATVGETEKDVNEFLF 559
TLAKFGALVD+LKPRIFVLLRRCLFD DDEVRDRATLYL+ L GE VG TEKDV EFLF
Sbjct: 510 TLAKFGALVDALKPRIFVLLRRCLFDTDDEVRDRATLYLQTLDGEVAVGSTEKDVKEFLF 569
Query: 560 GSFDIPLVNLETSLQNYEPSEAPFDISSVSLETKSQPLAEXXXXXXXXXXXASALSGPVP 619
GSFD+PL NLE SL+ YEPSE PFDIS VS E KSQPL E A A + VP
Sbjct: 570 GSFDVPLANLEASLKTYEPSEEPFDISLVSREVKSQPLQEKKAPGKKPPAGAPAPAP-VP 628
Query: 620 TVDASYEKLLSSIPEFAGFGKLFKSSAPVELTEAETEYSVNVVKHIYDGHVVLQYNCTNT 679
VDA Y+K+LSSIPEF+GFG+LFKSS PVELTEAETEY++NVVKHIY HVVLQYNCTNT
Sbjct: 629 AVDA-YQKILSSIPEFSGFGRLFKSSEPVELTEAETEYAINVVKHIYSSHVVLQYNCTNT 687
Query: 680 IPEQLLEEVVVFVDASEADEFSEVATKSLRSLPYDSPGQTFVAFEKLEGVLATGKFSNIL 739
IPEQLLE V V+VDA++A+EFSEV +K LRSLPYDSPGQ FVAFEK E V ATGKFSN+L
Sbjct: 688 IPEQLLENVTVYVDATDAEEFSEVCSKPLRSLPYDSPGQIFVAFEKPEHVPATGKFSNVL 747
Query: 740 KFIVKEVDPSTGEADDDGVEDEYQLEDLEITSADYMLKVGVSNFRNAWESMDPESERVDE 799
KFIVKEVD STGE D+DGVEDEYQ+EDLEI SADYML+V VSNFRNAWE+MDPESERVDE
Sbjct: 748 KFIVKEVDTSTGEVDEDGVEDEYQIEDLEIVSADYMLRVAVSNFRNAWENMDPESERVDE 807
Query: 800 YGLGARESLAEAVSAVIGILGMQPCEGTDVVPSNSRSHTCLLSGVFIGNVKVLVRLSFGL 859
YGLG RESLAEAVSAVI ILGMQPCEGT+VVP N+RSHTCLLSGVFIG+ KVLVRLSFGL
Sbjct: 808 YGLGVRESLAEAVSAVISILGMQPCEGTEVVPKNARSHTCLLSGVFIGDAKVLVRLSFGL 867
Query: 860 SGPKEVAMKLAVRSDDPEISDKIHEIVANG 889
SGPKEVAMKLAVRSDDPE+SDKIHEIVA+G
Sbjct: 868 SGPKEVAMKLAVRSDDPEVSDKIHEIVASG 897
>AK111169
Length = 946
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/944 (42%), Positives = 561/944 (59%), Gaps = 96/944 (10%)
Query: 26 EKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKLFQSKDA 85
+K +V+QEARVF++ + R+C ++TK++YLL G++F++ EAT +FF TKLFQ KD
Sbjct: 17 DKTSVIQEARVFNETPISPRKCRILLTKVIYLLYMGESFSRQEATTLFFGATKLFQHKDP 76
Query: 86 GLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKTD-MYRANAIRVLCRIIDSTLLTQIE 144
LR+M+YL IKEL P AD+VI+VT+S+MKDM + +YR NAIR L R++D +++ +E
Sbjct: 77 ALRQMIYLAIKELCPFADDVIMVTASIMKDMQPNVEVIYRPNAIRGLSRVVDPSMVQGLE 136
Query: 145 RYLKQAIVDKNPVVASAALVSGIYLLQTSPEVVKRWSNEVQEAVQSRAA----------- 193
R+ K AIVDKN ++SAALVS L + +VV+RW NE QEA+ S+++
Sbjct: 137 RFFKSAIVDKNTSISSAALVSAYQLQIAARDVVRRWGNEAQEAINSKSSSGASFSSGFAG 196
Query: 194 -----------------------------LVQFHALALLHQIRQNDRLAVSKLVTSLTRG 224
+ Q+HAL LL+ IRQ DR+AV+KLV L G
Sbjct: 197 AGSYLGFSGYGSSQAQSQSNYQAVASSSYITQYHALGLLYLIRQGDRMAVTKLVQQLGGG 256
Query: 225 S----------VRSPLAQCLLIRYTSQVIRESSMNSQGGDRPFFDFLESCLRNKAEMVIL 274
+RSP A C+L+RY ++V E N + P + LE LR+K++MV
Sbjct: 257 RGGASSGQGSVLRSPYAICMLVRYAAKVAEEDP-NLRA---PMMELLEGWLRHKSDMVNY 312
Query: 275 EAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVASTHPLAVTNCNID 334
EAAR I E+ V++++L I VLQLFLSS K L+FAA+RTL K+A T P AV CN+D
Sbjct: 313 EAARVICEMKNVSTQDLYRPIAVLQLFLSSPKSTLKFAAIRTLAKLAQTQPAAVQTCNVD 372
Query: 335 MESLISDQNRSXXXXXXXXXXKTGNESSVDRLMKQMTNFMSDIADEFKIVVVEAIRSLCL 394
ME+LI+D NRS KTGNE+SVDRLMKQ++ FMS+I+DEFK++VV+AIRSLCL
Sbjct: 373 MENLITDTNRSIATYAITTLLKTGNEASVDRLMKQISGFMSEISDEFKVIVVDAIRSLCL 432
Query: 395 KFPLKYRSLMNFLSNILREEGGFEYKKAXXXXXXXXXXXXXXAKESGLFHLCEFIEDCEF 454
KFP K +++FL+ +LR+EGGFEYK+A KE+ L HLCEFIEDCEF
Sbjct: 433 KFPSKQTVMLSFLAGVLRDEGGFEYKRAVVEAIFDMIKFIGDCKETALAHLCEFIEDCEF 492
Query: 455 TYMSTQILHFLGNEGPKTSDPSKYIRYIYNRVILENATVRASAVSTLAKFGALVDSLKPR 514
T +S +ILH LG EGPK P KYIRYIYNRVILENA VRA+AVS+LAKFG SL R
Sbjct: 493 TKLSVRILHLLGVEGPKMPQPHKYIRYIYNRVILENAIVRAAAVSSLAKFGIADKSLNAR 552
Query: 515 IFVLLRRCLFDGDDEVRDRATLYLKLLGGEATVGETEKDVNEFLFGSFDIPLVNLETSLQ 574
I VLL RCL D DDEVRDRA +YL++L + D + + L LE++LQ
Sbjct: 553 IKVLLERCLDDVDDEVRDRAAMYLRVLRESRLAAKVVNDESSY-------KLTALESALQ 605
Query: 575 NY--EPSEAP--FDISSVSLETKSQPLAEXXXXXXXXXXXASALSGPVPTVDAS------ 624
+Y +PS + FDI+ + T+ + E + + +V A+
Sbjct: 606 SYVSDPSSSTSGFDITKIPRVTREEARQEALRAKSEATASVAMAADSSQSVHANSNKGAS 665
Query: 625 -------------YEKLLSSIPEFAGFGKLFKSSA-PVELTEAETEYSVNVVKHIYDGHV 670
Y + L+++P+FA +G + KSS+ VELTE+ETEY V+ VKH++ HV
Sbjct: 666 TSKVTSSGDSESLYAQQLAAVPQFAEYGPVLKSSSKAVELTESETEYVVSAVKHVFAEHV 725
Query: 671 VLQYNCTNTIPEQLLEEVVVFVDASEADEFSEVATKSLRSLPYDSP-GQTFVAFEKLEGV 729
V+QYN TNT+P+ +LE V V V + E ++ +L +P G +V+F + G
Sbjct: 726 VIQYNVTNTLPDTVLENVAVVVGGAAEAGLHEDFIVTVPALSAQNPSGTVYVSFTREGGA 785
Query: 730 --LATGKFSNILKFIVKEVDPSTGEADDDGVEDEYQLEDLEITSADYMLKVGVSNFRNAW 787
A SN L+F+ KEVDPS+GE +++G +DEYQ E+LE+ ADY+ V +NF W
Sbjct: 786 TDYAQATLSNTLRFVSKEVDPSSGEPEEEGYDDEYQTEELELGVADYVKPV-YANFSEEW 844
Query: 788 ESMDPESERVDEYGLGARESLAEAVSAVIGILGMQPCEGTDVVPSNSRSHTCLLSGVFIG 847
+ + + + L A + L A +I ++GM P GT+ PS++ HT LSG +
Sbjct: 845 DKLASAPSATETFALTALDGLKTACDTLIELMGMMPLGGTE-SPSSTSVHTLTLSGA-VA 902
Query: 848 N----VKVLVRLSFGLSGPKEVAMKLAVRSDDPEISDKIHEIVA 887
N VK L R + + V M+L+VR+D E I +A
Sbjct: 903 NPGKPVKALARCRMTFASGQGVTMELSVRADSDEACQLIMSAIA 946
>AK110014
Length = 913
Score = 633 bits (1632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/903 (42%), Positives = 533/903 (59%), Gaps = 67/903 (7%)
Query: 25 IEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKLFQSKD 84
I+K +V QEARVF + R+C ++TKL LL G+++ + EAT +FF +KLF +KD
Sbjct: 14 IDKTSVFQEARVFSQSPISPRKCRVILTKLALLLFTGESWGRQEATNLFFGISKLFSNKD 73
Query: 85 AGLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKTDM-YRANAIRVLCRIIDSTLLTQI 143
A LR+MVYL++KEL+ SAD+VI+VT+S+MKD + +D+ YR NAIR LCR+ID++ + I
Sbjct: 74 ASLRQMVYLVLKELASSADDVIMVTASIMKDTSVGSDVVYRPNAIRALCRVIDASTVQAI 133
Query: 144 ERYLKQAIVDKNPVVASAALVSGIYLLQTSPEVVKRWSNEVQEAVQ-------------- 189
ER +K IVDKNP VASAALVS +LL + VV+RW +E QEA
Sbjct: 134 ERLVKTCIVDKNPSVASAALVSSYHLLPVAKGVVRRWQSEAQEAASGPKSGGFLGGFGGS 193
Query: 190 -------SRAALVQFHALALLHQIRQNDRLAVSKLVTSLTR-GSVRSPLAQCLLIRYTSQ 241
S + Q+HA+ LL+Q+R DR+++ K+V + G V+SP A LL+R ++
Sbjct: 194 SHNALQASTNYMTQYHAIGLLYQMRSGDRMSLVKMVQQYSAAGVVKSPAATVLLVRLAAK 253
Query: 242 VIRESSMNSQGGDRPFFDFLESCLRNKAEMVILEAARAITELNGVTSRELTPAITVLQLF 301
+ E +P L+ LR+K+EMV EAA+AI +L G T EL A+ VLQLF
Sbjct: 254 LAEEDP----NLRKPMVQLLDGWLRHKSEMVNFEAAKAICDLRGATDAELVQAVHVLQLF 309
Query: 302 LSSSKPVLRFAAVRTLNKVASTHPLAVTNCNIDMESLISDQNRSXXXXXXXXXXKTGNES 361
L+S + V +FAA+R L+ +AS P AV +CN D+ESLI++ NRS KTGNES
Sbjct: 310 LTSPRAVTKFAALRILSTMASFKPDAVRSCNQDIESLITNSNRSIATFAITTLLKTGNES 369
Query: 362 SVDRLMKQMTNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKK 421
SVDRLMKQ+T FM++I DEFK+ +VEA+R+L LKF K ++FLS ILR+EGG+E+K+
Sbjct: 370 SVDRLMKQITGFMAEITDEFKVTIVEAVRTLALKFKSKQAGFLSFLSGILRDEGGYEFKR 429
Query: 422 AXXXXXXXXXXXXXXAKESGLFHLCEFIEDCEFTYMSTQILHFLGNEGPKTSDPSKYIRY 481
+ AKE L LCEFIEDCEFT ++ +IL LG EGP T P+KYIRY
Sbjct: 430 SVVEAIMDLIRFVPEAKEDALATLCEFIEDCEFTKLAVRILFVLGREGPSTPHPTKYIRY 489
Query: 482 IYNRVILENATVRASAVSTLAKFGALVDS--LKPRIFVLLRRCLFDGDDEVRDRATLYLK 539
IYNRV+LENA VRA+A S LAKFG +K + VLL RCL D DDEVRDRA L L+
Sbjct: 490 IYNRVVLENAIVRAAATSALAKFGVGQKDPEIKKSVHVLLSRCLDDVDDEVRDRAALNLR 549
Query: 540 LLGGEATVGETEKDVNEFLFGSFDIPLVNLETSLQNYEPSEA------PFDISSVSLETK 593
L+ + + + F+ L LE L Y S++ FDI+ + ++
Sbjct: 550 LMDQDDDLAIS------FIRNDSMYSLPTLEHQLTMYVSSDSKETFADAFDITKIPTVSR 603
Query: 594 SQP----LAEXXXXXXXXXXXASALSGPVPTVDA----------SYEKLLSSIPEFAGFG 639
Q L++ SA P + Y + L IPE A G
Sbjct: 604 EQADAADLSKKTEGSTPILKAPSAQKAPAKSGAESAAAATAAMQKYAEELQKIPELAAHG 663
Query: 640 KLFKSSAPVELTEAETEYSVNVVKHIYDGHVVLQYNCTNTIPEQLLEEVVVFVDASEADE 699
L KSSA VELTE+ETEY V VKH++ H+VLQY+ NT+P+ +L +V + V + D
Sbjct: 664 GLLKSSAVVELTESETEYVVTAVKHVFKDHIVLQYDVKNTLPDTVLLDVEMVVAPEDDDS 723
Query: 700 -FSEVATKSLRSLPYDSPGQTFVAFEKLEG---VLATGKFSNILKFIVKEVDPSTGEADD 755
E L + PG +V+F++LE LAT F+N LKF+ KE+DPSTGE ++
Sbjct: 724 GLEEDFIIPAAELKTNEPGTIYVSFKRLETESMFLATS-FTNTLKFVSKEIDPSTGEPEE 782
Query: 756 -DGVEDEYQLEDLEITSADYMLKVGVSNFRNAWESMDPESERVDEYGLGARESLAEAVSA 814
+G DEYQ+E+LE+ ADY++ +F N WE + ES + L +S+A+A
Sbjct: 783 GEGYADEYQVEELELNGADYVVPAYAGSFDNVWEQSNGESA-TETLQLANMKSIADATEQ 841
Query: 815 VIGILGMQPCEGTDVVPSNSRSHTCLLSG--VFIGNVKVLVRLSFGLSGPKEVAMKLAVR 872
+I L +QP EG+D VP + +H L G V G V LVR++F S V MK+ R
Sbjct: 842 LIKTLSLQPLEGSD-VPLSPSTHALKLYGKTVTGGKVAALVRMAF--SAKTGVTMKIEAR 898
Query: 873 SDD 875
+++
Sbjct: 899 AEE 901
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,519,847
Number of extensions: 910215
Number of successful extensions: 2283
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2267
Number of HSP's successfully gapped: 5
Length of query: 889
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 779
Effective length of database: 11,292,261
Effective search space: 8796671319
Effective search space used: 8796671319
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)