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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0201100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0221) R2 : 0.431
β1 : 0.765 (0.081) R2dD : 0.116 R2D : 0.0821
β2 : -- (--) R2dC : -- R2C : --
β3 : -4.73 (0.295) R2dE : 0.322 R2E : 0.31
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.172 (0.0472) R2dN8 : 0.0221 R2N8 : 0.00546
σ : 0.416
deviance : 78.92
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 1.082
memory length : 10
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.03
open length of G : 0.817

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
76.98 0.412 12 0.695 0.0558 -3.35 0.737 -11.7 0.197 17.8 1.1 10 4.03 0.82
77.34 0.413 12 0.774 0.0863 -4.66 0.691 -- 0.171 18.1 1.082 10 4.03 0.817
77.95 0.411 12 0.7 0.0996 -3.52 -- -9.87 0.202 21 1.199 10 4.02 0.817
78.19 0.415 12 0.765 0.114 -4.71 -- -- 0.173 20.7 1.082 10 4.03 0.817
78.5 0.413 12 0.696 -- -3.49 -- -10.9 0.202 -- 1.197 10 4.03 0.833
120.2 0.514 12 0.745 0.156 -- 0.877 -- 0.195 17.8 -- -- -- --
121.96 0.517 12 0.738 0.168 -- -- -- 0.198 18.8 -- -- -- --
78.92 0.416 12 0.765 -- -4.73 -- -- 0.172 -- 1.082 10 4.03 0.817
93.61 0.453 12 -- 0.113 -4.65 -- -- 0.0877 21.2 1.001 10 4.03 0.787
123.44 0.519 12 0.734 -- -- -- -- 0.195 -- -- -- -- --
136.31 0.546 12 -- 0.16 -- -- -- 0.116 19.1 -- -- -- --
94.35 0.454 12 -- -- -4.67 -- -- 0.087 -- 1.069 10 4.03 0.76
137.66 0.548 12 -- -- -- -- -- 0.113 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 98.86 wind 1.0 10 > th dose independent rect. 4 1
2 113.46 temperature 20.0 270 > th dose independent rect. 4 2
3 113.54 temperature 10.0 270 > th dose dependent rect. 4 2
4 113.54 temperature 10.0 90 > th dose dependent rect. 4 5
5 113.62 temperature 20.0 90 > th dose independent rect. 4 5
7 113.70 radiation 10.0 270 < th dose independent rect. 4 2
8 113.72 humidity 70.0 10 > th dose independent rect. 18 11
9 113.72 humidity 70.0 270 > th dose dependent rect. 4 2
10 113.75 humidity 70.0 90 > th dose independent rect. 17 11
15 113.80 humidity 50.0 270 > th dose independent rect. 6 22
16 113.83 wind 9.0 90 < th dose independent rect. 4 5
17 113.83 temperature 10.0 90 > th dose independent rect. 4 5
19 113.83 humidity 50.0 90 > th dose independent rect. 4 5
20 113.83 atmosphere 995.0 90 > th dose independent rect. 4 5
21 113.83 atmosphere 1015.0 90 < th dose independent rect. 4 5
22 113.83 precipitation 0.1 90 < th dose independent rect. 4 5
23 113.83 temperature 10.0 90 > th dose independent rect. 9 19
24 113.83 precipitation 0.1 90 < th dose dependent rect. 4 5
26 113.84 wind 9.0 90 < th dose independent rect. 9 19
29 113.85 radiation 40.0 90 < th dose independent rect. 4 5
31 113.87 wind 1.0 90 > th dose independent rect. 9 20
32 113.87 wind 9.0 90 < th dose dependent rect. 4 5
34 113.90 humidity 50.0 90 > th dose dependent rect. 4 5
35 113.94 temperature 30.0 90 < th dose independent rect. 4 5
37 113.94 wind 9.0 10 < th dose dependent rect. 5 5
38 113.94 temperature 10.0 10 > th dose dependent rect. 5 17
40 113.97 radiation 1.0 270 > th dose independent rect. 18 12
41 113.99 wind 9.0 270 < th dose independent rect. 6 22
44 114.00 temperature 30.0 90 < th dose independent rect. 9 19
46 114.02 atmosphere 1010.0 270 < th dose independent rect. 4 2
48 114.03 precipitation 0.1 270 < th dose independent rect. 4 2
50 114.03 precipitation 0.1 270 < th dose dependent rect. 4 2
55 114.05 wind 9.0 90 < th dose dependent rect. 9 19
56 114.07 atmosphere 995.0 90 > th dose independent rect. 9 19
58 114.07 humidity 50.0 10 > th dose dependent rect. 5 5
59 114.08 wind 9.0 270 < th dose independent rect. 4 2
60 114.08 temperature 10.0 270 > th dose independent rect. 4 2
62 114.08 temperature 30.0 270 < th dose independent rect. 4 2
63 114.08 humidity 50.0 270 > th dose independent rect. 4 2
66 114.08 atmosphere 995.0 270 > th dose independent rect. 4 2
71 114.08 temperature 10.0 270 > th dose independent rect. 6 22
73 114.09 radiation 30.0 270 < th dose dependent rect. 4 2
82 114.13 wind 7.0 10 < th dose independent rect. 5 5
86 114.14 temperature 10.0 10 > th dose independent rect. 5 5
88 114.14 humidity 50.0 10 > th dose independent rect. 5 5
89 114.14 atmosphere 995.0 10 > th dose independent rect. 5 5
90 114.14 atmosphere 1015.0 10 < th dose independent rect. 5 5
91 114.14 temperature 10.0 10 > th dose independent rect. 10 19
93 114.15 precipitation 0.1 10 < th dose independent rect. 5 5
94 114.15 wind 9.0 270 < th dose dependent rect. 4 2
96 114.15 temperature 10.0 10 > th dose dependent rect. 5 5
97 114.15 precipitation 0.1 10 < th dose dependent rect. 5 5
100 114.16 atmosphere 1005.0 90 > th dose independent rect. 21 7
101 114.16 wind 9.0 10 < th dose independent rect. 10 19
102 114.16 radiation 1.0 90 < th dose dependent sin 11 NA
103 114.18 radiation 1.0 10 > th dose independent sin 10 NA
104 114.18 atmosphere 995.0 10 > th dose dependent rect. 10 19
106 114.19 atmosphere 1005.0 10 > th dose independent rect. 22 7
116 114.25 radiation 30.0 10 < th dose independent rect. 5 4
119 114.26 atmosphere 995.0 10 > th dose independent rect. 10 19
131 114.29 atmosphere 995.0 90 > th dose dependent rect. 9 19
135 114.31 humidity 70.0 10 > th dose independent rect. 5 4
147 114.35 humidity 70.0 90 > th dose independent rect. 15 13
164 114.43 atmosphere 1005.0 90 > th dose independent rect. 23 5
189 114.45 radiation 1.0 10 > th dose independent rect. 18 16
195 114.46 radiation 1.0 30 < th dose independent sin 10 NA
201 114.46 temperature 30.0 10 < th dose independent rect. 5 4
221 114.47 precipitation 0.1 90 < th dose independent rect. 9 19
224 114.47 radiation 40.0 10 < th dose dependent rect. 5 4
226 114.47 precipitation 0.1 90 < th dose dependent rect. 9 19
251 114.54 precipitation 0.1 10 < th dose independent rect. 10 19
253 114.54 precipitation 0.1 10 < th dose dependent rect. 10 19
265 114.57 temperature 30.0 10 < th dose independent rect. 10 19
272 114.59 wind 1.0 90 > th dose independent rect. 7 22
314 114.63 temperature 30.0 270 < th dose independent rect. 7 20
322 114.64 humidity 50.0 90 > th dose dependent rect. 10 18
325 114.65 radiation 1.0 10 > th dose independent rect. 5 5
339 114.65 wind 9.0 270 < th dose dependent rect. 7 20
356 114.68 precipitation 0.1 270 < th dose independent rect. 6 22
360 114.68 precipitation 0.1 270 < th dose dependent rect. 6 22
366 114.70 wind 5.0 90 < th dose independent rect. 21 7
381 114.71 humidity 60.0 14400 > th dose independent rect. 20 9
392 114.74 humidity 50.0 90 > th dose dependent rect. 17 11
463 114.88 precipitation 0.1 270 < th dose independent rect. 7 20
468 114.88 precipitation 0.1 270 < th dose dependent rect. 7 20
482 114.91 atmosphere 1015.0 90 < th dose dependent rect. 4 5
483 114.91 wind 9.0 10 < th dose dependent rect. 10 19
496 114.94 temperature 30.0 90 < th dose independent rect. 17 11
525 114.99 humidity 60.0 10 > th dose dependent rect. 18 11
526 114.99 humidity 50.0 10 > th dose dependent rect. 10 19
581 115.07 humidity 70.0 90 > th dose independent rect. 11 17
583 115.07 atmosphere 995.0 270 > th dose independent rect. 7 20
584 115.07 wind 9.0 90 < th dose dependent rect. 21 7
594 115.08 precipitation 0.1 90 < th dose independent rect. 4 17
595 115.08 atmosphere 1015.0 90 < th dose independent rect. 9 19
601 115.08 precipitation 0.1 90 < th dose dependent rect. 4 17
604 115.09 radiation 1.0 270 > th dose independent rect. 5 1
614 115.11 atmosphere 995.0 10 > th dose dependent rect. 22 7
615 115.11 humidity 60.0 90 > th dose dependent rect. 15 13
628 115.12 atmosphere 995.0 90 > th dose dependent rect. 4 5
644 115.15 wind 1.0 90 > th dose independent rect. 21 8
685 115.17 radiation 1.0 90 < th dose dependent rect. 21 22
693 115.18 radiation 30.0 4320 < th dose dependent rect. 22 7
701 115.19 atmosphere 1015.0 270 < th dose dependent rect. 4 2
731 115.22 atmosphere 995.0 270 > th dose dependent rect. 4 2
736 115.22 atmosphere 995.0 10 > th dose dependent rect. 5 4
745 115.23 temperature 15.0 270 > th dose independent rect. 16 15
746 115.23 atmosphere 1015.0 10 < th dose independent rect. 10 19
784 115.27 temperature 10.0 1440 > th dose independent rect. 5 6
787 115.27 atmosphere 995.0 1440 > th dose independent rect. 5 6
788 115.27 temperature 10.0 1440 > th dose independent rect. 11 18
808 115.29 precipitation 0.1 10 < th dose independent rect. 5 17
809 115.29 atmosphere 1005.0 90 > th dose independent rect. 9 19
812 115.29 precipitation 0.1 10 < th dose dependent rect. 5 17
834 115.31 temperature 15.0 90 > th dose independent rect. 21 7
851 115.33 temperature 20.0 10 > th dose independent rect. 5 17
896 115.36 temperature 15.0 90 > th dose independent rect. 4 17
923 115.37 atmosphere 995.0 90 > th dose dependent rect. 21 7
933 115.38 temperature 30.0 90 < th dose independent rect. 21 7
934 115.38 humidity 50.0 90 > th dose independent rect. 21 7
937 115.38 atmosphere 995.0 90 > th dose independent rect. 21 7
939 115.38 radiation 1.0 90 < th dose independent rect. 21 7
952 115.38 atmosphere 1015.0 90 < th dose independent rect. 4 17
956 115.38 atmosphere 1015.0 10 < th dose dependent rect. 5 5
958 115.38 radiation 1.0 90 < th dose dependent rect. 21 7
974 115.40 wind 5.0 10 < th dose independent rect. 22 7
993 115.42 humidity 50.0 270 > th dose independent rect. 7 10
995 115.42 wind 9.0 90 < th dose independent rect. 4 17