Os03g0227000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP).
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Os03g0227000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.44 | 0.291 | 10 | 0.7 | 0.364 | 1.3 | -0.295 | 0.968 | 0.4 | 8.03 | 29.43 | 30 | -- | -- |
| 39.77 | 0.296 | 9.99 | 0.859 | 0.395 | 1.29 | -0.387 | -- | 0.439 | 8.13 | 29.43 | 30 | -- | -- |
| 38.54 | 0.289 | 10 | 0.686 | 0.344 | 1.33 | -- | 1.06 | 0.404 | 8.3 | 29.16 | 53 | -- | -- |
| 40.02 | 0.295 | 9.99 | 0.859 | 0.347 | 1.33 | -- | -- | 0.43 | 8.18 | 30.25 | 50 | -- | -- |
| 43.77 | 0.308 | 10 | 0.718 | -- | 1.57 | -- | 1.08 | 0.362 | -- | 45.79 | 142 | -- | -- |
| 63.61 | 0.374 | 10 | 0.54 | 0.583 | -- | -0.14 | -- | 0.181 | 5.01 | -- | -- | -- | -- |
| 63.65 | 0.374 | 10 | 0.54 | 0.582 | -- | -- | -- | 0.181 | 4.98 | -- | -- | -- | -- |
| 44.65 | 0.311 | 10 | 0.874 | -- | 1.6 | -- | -- | 0.405 | -- | 38.64 | 147 | -- | -- |
| 57.21 | 0.354 | 10 | -- | 0.402 | 1.15 | -- | -- | 0.258 | 7.05 | 52.42 | 40 | -- | -- |
| 81.48 | 0.422 | 10.1 | 0.562 | -- | -- | -- | -- | 0.196 | -- | -- | -- | -- | -- |
| 71.35 | 0.395 | 10.1 | -- | 0.592 | -- | -- | -- | 0.121 | 4.95 | -- | -- | -- | -- |
| 63.46 | 0.371 | 10 | -- | -- | 1.31 | -- | -- | 0.277 | -- | 65.19 | 132 | -- | -- |
| 89.8 | 0.442 | 10.1 | -- | -- | -- | -- | -- | 0.134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.88 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 7 | 36.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 8 | 36.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 9 | 36.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 20 | 37.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 22 | 37.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 27 | 37.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 38 | 37.96 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 45 | 38.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 63 | 38.47 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 67 | 38.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 79 | 38.72 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 89 | 38.90 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 115 | 39.15 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 120 | 39.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 20 |
| 125 | 39.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 160 | 39.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 176 | 39.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 184 | 39.83 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 195 | 39.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 226 | 40.19 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 280 | 40.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 286 | 40.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 300 | 40.97 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 337 | 41.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 344 | 41.34 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 360 | 41.44 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 22 |
| 466 | 41.97 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 513 | 42.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 603 | 42.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 677 | 43.03 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 722 | 43.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 817 | 43.68 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 868 | 43.86 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 899 | 44.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 908 | 44.04 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 22 |
| 972 | 44.25 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 23 |