BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0198300 Os07g0198300|AK060951
         (207 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0198300  Plant lipid transfer/seed storage/trypsin-alph...   240   5e-64
Os03g0804200  Plant lipid transfer protein/Par allergen fami...   125   2e-29

>Os07g0198300 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
           domain containing protein
          Length = 207

 Score =  240 bits (613), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 121/139 (87%), Positives = 121/139 (87%)

Query: 1   MEHHRHRGXXXXXXXXXXXXXXXXXXRGDFAADRAECADKLMALSTCLTFVQDGASGGAA 60
           MEHHRHRG                  RGDFAADRAECADKLMALSTCLTFVQDGASGGAA
Sbjct: 1   MEHHRHRGAVVLVVAAAAMAMAMSAVRGDFAADRAECADKLMALSTCLTFVQDGASGGAA 60

Query: 61  APTPDCCSGLKAVLAASRKCLCVLIKDRDDPNLGLKINVTKALSLPQLCNAPANISDCPR 120
           APTPDCCSGLKAVLAASRKCLCVLIKDRDDPNLGLKINVTKALSLPQLCNAPANISDCPR
Sbjct: 61  APTPDCCSGLKAVLAASRKCLCVLIKDRDDPNLGLKINVTKALSLPQLCNAPANISDCPR 120

Query: 121 LLNLPPNSKDAQIFEQFAK 139
           LLNLPPNSKDAQIFEQFAK
Sbjct: 121 LLNLPPNSKDAQIFEQFAK 139



>Os03g0804200 Plant lipid transfer protein/Par allergen family protein
          Length = 127

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 76/93 (81%), Gaps = 2/93 (2%)

Query: 27  RGDFAADRAECADKLMALSTCLTFVQDGASGGAAAPTPDCCSGLKAVLAASRKCLCVLIK 86
           +GDFAAD+AECADKLMAL+TCLT+V++ A+  A APT DCC+GL  V+A S+KCLCVL+K
Sbjct: 24  KGDFAADKAECADKLMALATCLTYVEEKAT--ARAPTRDCCAGLGQVVAGSKKCLCVLVK 81

Query: 87  DRDDPNLGLKINVTKALSLPQLCNAPANISDCP 119
           DRD+P LG +INVT+A+ LP  C+  A  SDCP
Sbjct: 82  DRDEPALGFRINVTRAMDLPSGCSIAATFSDCP 114



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,747,362
Number of extensions: 173257
Number of successful extensions: 620
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 3
Length of query: 207
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 111
Effective length of database: 12,023,257
Effective search space: 1334581527
Effective search space used: 1334581527
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)