BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0193600 Os07g0193600|AK070547
         (592 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0193600  Conserved hypothetical protein                      957   0.0  
Os03g0802800  Hypothetical protein                                168   1e-41

>Os07g0193600 Conserved hypothetical protein
          Length = 592

 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/592 (83%), Positives = 494/592 (83%)

Query: 1   EALITPNSTLDDVHMPLLKSIPPVTRMAMGRGTWVTVLCRKLRDWWHWVAEGDIPIVASH 60
           EALITPNSTLDDVHMPLLKSIPPVTRMAMGRGTWVTVLCRKLRDWWHWVAEGDIPIVASH
Sbjct: 1   EALITPNSTLDDVHMPLLKSIPPVTRMAMGRGTWVTVLCRKLRDWWHWVAEGDIPIVASH 60

Query: 61  GTEIEAYKVLEPATRLIILKAICDIRVEQEDIRNFIDSSLKHGYDLSTFRKERIGGDAYG 120
           GTEIEAYKVLEPATRLIILKAICDIRVEQEDIRNFIDSSLKHGYDLSTFRKERIGGDAYG
Sbjct: 61  GTEIEAYKVLEPATRLIILKAICDIRVEQEDIRNFIDSSLKHGYDLSTFRKERIGGDAYG 120

Query: 121 ISYWYEDDPILGHRLYREIRRVEQLKKEPGKRSRGKGGSIILPVVSYQWETVASNFDEFD 180
           ISYWYEDDPILGHRLYREIRRVEQLKKEPGKRSRGKGGSIILPVVSYQWETVASNFDEFD
Sbjct: 121 ISYWYEDDPILGHRLYREIRRVEQLKKEPGKRSRGKGGSIILPVVSYQWETVASNFDEFD 180

Query: 181 DVAEKLFSSRNRTEANLGKKLKIEYLPDIEKIHXXXXXXXXXXXXXALLIDSFLAPDGFT 240
           DVAEKLFSSRNRTEANLGKKLKIEYLPDIEKIH             ALLIDSFLAPDGFT
Sbjct: 181 DVAEKLFSSRNRTEANLGKKLKIEYLPDIEKIHKKKERLLKKQQREALLIDSFLAPDGFT 240

Query: 241 TGRSLRDRKPVTYTFDEYDRSISEAIKITKKGENSAEPAAPANRRILTPRPEASSNGKVN 300
           TGRSLRDRKPVTYTFDEYDRSISEAIKITKKGENSAEPAAPANRRILTPRPEASSNGKVN
Sbjct: 241 TGRSLRDRKPVTYTFDEYDRSISEAIKITKKGENSAEPAAPANRRILTPRPEASSNGKVN 300

Query: 301 GLSPTTNEYDGNSSKSDDYRDSDGEEESETLDXXXXXXXXXXXXXXDFVEAVSDIDPNFD 360
           GLSPTTNEYDGNSSKSDDYRDSDGEEESETLD              DFVEAVSDIDPNFD
Sbjct: 301 GLSPTTNEYDGNSSKSDDYRDSDGEEESETLDRSNRRRRRSQRYTRDFVEAVSDIDPNFD 360

Query: 361 SDDEIMGEAVYDEEYLRTRKQQKTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQQ 420
           SDDEIMGEAVYDEEYLRTRKQQKTS                                PQQ
Sbjct: 361 SDDEIMGEAVYDEEYLRTRKQQKTSSASEEDEEFRLEEDDDEEEEEYSLSTSEDLEEPQQ 420

Query: 421 RKKLQTRGRRGAKLRSVDEIQTGLRRSKRSSRQRINYQQYDYSDTDTEGGKEGKSDASDP 480
           RKKLQTRGRRGAKLRSVDEIQTGLRRSKRSSRQRINYQQYDYSDTDTEGGKEGKSDASDP
Sbjct: 421 RKKLQTRGRRGAKLRSVDEIQTGLRRSKRSSRQRINYQQYDYSDTDTEGGKEGKSDASDP 480

Query: 481 DAGFDAENDTXXXXXXXXXXXXXXXXXXXXKDNSDDNKMDEDHVMVENKXXXXXXXXXXX 540
           DAGFDAENDT                    KDNSDDNKMDEDHVMVENK           
Sbjct: 481 DAGFDAENDTELSTSSQEQEEDEDDGPEEQKDNSDDNKMDEDHVMVENKEEQEEQPQPPP 540

Query: 541 XXXXXXXXKMEAPSREIETVGRTFLDLNELAPGGGFDDGPSLTMKDEDMDNS 592
                   KMEAPSREIETVGRTFLDLNELAPGGGFDDGPSLTMKDEDMDNS
Sbjct: 541 LPPQQPVEKMEAPSREIETVGRTFLDLNELAPGGGFDDGPSLTMKDEDMDNS 592



>Os03g0802800 Hypothetical protein
          Length = 290

 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/318 (38%), Positives = 157/318 (49%), Gaps = 42/318 (13%)

Query: 263 SEAIKITKKGENSAEPAAPANRRILTPRPEASSNGKVNGLSPTTNEYDGNSS-KSDDYRD 321
           +EAIK TKK ENS+E    +NRR+  P+ E ++NG++ G SP  N + G    +S  Y+ 
Sbjct: 1   NEAIKPTKKSENSSEFITTSNRRV-HPKRETATNGRLAGPSPLCNGFYGEYPLRSHGYQG 59

Query: 322 SDGEEESETLDXXXXXXXXXXXXXXDFVEAVSDIDPNFDSDDEIMGEAVYDEEYLRTRKQ 381
           S+ E++ ETLD              DFVEA+SD+DPNFDSDD+I+GEAVYDEEYLR+RKQ
Sbjct: 60  SEWEKKPETLDRRQRKRSRRYTQ--DFVEAISDVDPNFDSDDDIIGEAVYDEEYLRSRKQ 117

Query: 382 QKTSXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXPQQRKKLQTRGRRGAKLRSVDEI 440
            K                                   PQ+ K+L T   RG  LR++D  
Sbjct: 118 YKARLLELDKEFQLEQVADDGNDEVEYPSSTSEDEKEPQRYKRLATCNPRGTNLRTIDGF 177

Query: 441 QTGLRRSKRSSRQRINYQQYDYSDTDTEGGKEGKSDASDPDAGFDAENDTXXXXXXXXXX 500
           QT + RSKRS+R  + Y QYD S TDTE GK GK    DPDAG DA ND           
Sbjct: 178 QTCITRSKRSTRPHMKYHQYDLSGTDTELGKPGKIKVPDPDAGSDALNDMELST------ 231

Query: 501 XXXXXXXXXXKDNSDDNKMDEDHVMVENKXXXXXXXXXXXXXXXXXXXKMEAPSREIETV 560
                        S D + +   V  E                      + +PSR   + 
Sbjct: 232 ------------TSQDQEEEGAEVNKERP-------------------PLLSPSRNNGSD 260

Query: 561 GRTFLDLNELAPGGGFDD 578
           GR FLDLNE+AP GGFD+
Sbjct: 261 GRRFLDLNEVAPVGGFDE 278



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,275,456
Number of extensions: 732682
Number of successful extensions: 1907
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1903
Number of HSP's successfully gapped: 2
Length of query: 592
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 486
Effective length of database: 11,501,117
Effective search space: 5589542862
Effective search space used: 5589542862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)