Os03g0802800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0802800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.84 | 0.234 | 12 | -0.0989 | 0.304 | 0.156 | 0.254 | -5.06 | 0.117 | 23.6 | 30.4 | 3967 | -- | -- |
| 28.97 | 0.251 | 11.9 | 0.662 | 0.275 | -0.314 | 0.345 | -- | 0.279 | 23.2 | 31.8 | 11839 | -- | -- |
| 25.07 | 0.233 | 12 | -0.102 | 0.305 | 0.156 | -- | -5.02 | 0.118 | 23.3 | 30.34 | 3928 | -- | -- |
| 28.64 | 0.249 | 11.9 | 0.627 | 0.259 | -0.333 | -- | -- | 0.264 | 21.8 | 31.8 | 7398 | -- | -- |
| 30.78 | 0.258 | 12 | -0.0738 | -- | 0.181 | -- | -4.89 | 0.133 | -- | 30.92 | 4073 | -- | -- |
| 32.86 | 0.269 | 11.9 | 0.563 | 0.277 | -- | 0.124 | -- | 0.192 | 23.1 | -- | -- | -- | -- |
| 32.91 | 0.269 | 11.9 | 0.559 | 0.277 | -- | -- | -- | 0.192 | 22.9 | -- | -- | -- | -- |
| 32.77 | 0.267 | 11.9 | 0.651 | -- | -0.34 | -- | -- | 0.252 | -- | 32.1 | 7389 | -- | -- |
| 38.02 | 0.287 | 12 | -- | 0.287 | -0.257 | -- | -- | 0.101 | 23 | 32.5 | 6057 | -- | -- |
| 37.69 | 0.287 | 11.9 | 0.565 | -- | -- | -- | -- | 0.194 | -- | -- | -- | -- | -- |
| 41.14 | 0.3 | 12 | -- | 0.282 | -- | -- | -- | 0.13 | 23 | -- | -- | -- | -- |
| 42.98 | 0.305 | 11.9 | -- | -- | -0.266 | -- | -- | 0.109 | -- | 32.1 | 5996 | -- | -- |
| 46.1 | 0.317 | 11.9 | -- | -- | -- | -- | -- | 0.132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.20 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 7 |
| 3 | 24.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 9 |
| 9 | 24.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 7 |
| 24 | 24.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 28 | 24.48 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 14 |
| 65 | 24.58 | temperature | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 66 | 24.58 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 110 | 24.64 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 21 |
| 131 | 24.67 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 21 |
| 134 | 24.69 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 141 | 24.71 | temperature | 30 | 4320 | < th | dose independent | sin | 10 | NA |
| 195 | 24.80 | temperature | 30 | 4320 | > th | dose independent | sin | 10 | NA |
| 224 | 24.84 | temperature | 30 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 233 | 24.86 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 301 | 24.92 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 336 | 24.97 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 440 | 25.07 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 9 |
| 460 | 25.08 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 519 | 25.11 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 675 | 25.13 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 676 | 25.13 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 687 | 25.14 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 13 |
| 694 | 25.15 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 9 |
| 721 | 25.15 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 838 | 25.15 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 23 |
| 916 | 25.18 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 955 | 25.18 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 21 |