Os07g0193600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0193600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.73 | 0.219 | 10.2 | 0.594 | 0.621 | 0.277 | -0.0749 | -0.785 | 0.0908 | 8.31 | 1.89 | 1433 | -- | -- |
| 22.58 | 0.221 | 10.2 | 0.656 | 0.631 | 0.269 | -0.00559 | -- | 0.106 | 8.28 | 1.079 | 1432 | -- | -- |
| 21.73 | 0.217 | 10.2 | 0.59 | 0.624 | 0.277 | -- | -0.793 | 0.0918 | 8.38 | 1.892 | 1416 | -- | -- |
| 22.47 | 0.221 | 10.2 | 0.681 | 0.637 | 0.342 | -- | -- | 0.114 | 8.24 | 1.07 | 1448 | -- | -- |
| 36.99 | 0.285 | 10.2 | 0.755 | -- | 0.274 | -- | 0.0307 | 0.163 | -- | 1.86 | 1514 | -- | -- |
| 23.86 | 0.229 | 10.2 | 0.754 | 0.624 | -- | -0.107 | -- | 0.167 | 8.28 | -- | -- | -- | -- |
| 23.89 | 0.229 | 10.2 | 0.751 | 0.624 | -- | -- | -- | 0.168 | 8.3 | -- | -- | -- | -- |
| 36.69 | 0.283 | 10.2 | 0.751 | -- | 0.28 | -- | -- | 0.168 | -- | 1.07 | 1448 | -- | -- |
| 33.82 | 0.271 | 10.2 | -- | 0.647 | 0.652 | -- | -- | 0.0989 | 8.05 | 0.5424 | 1455 | -- | -- |
| 45.46 | 0.315 | 10.2 | 0.755 | -- | -- | -- | -- | 0.174 | -- | -- | -- | -- | -- |
| 38.75 | 0.291 | 10.2 | -- | 0.628 | -- | -- | -- | 0.0839 | 8.21 | -- | -- | -- | -- |
| 50.97 | 0.333 | 10.2 | -- | -- | 0.896 | -- | -- | -0.00182 | -- | 0.55 | 1510 | -- | -- |
| 60.49 | 0.363 | 10.2 | -- | -- | -- | -- | -- | 0.0906 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.47 | temperature | 30 | 10 | > th | dose dependent | rect. | 10 | 3 |
| 19 | 21.49 | temperature | 30 | 10 | > th | dose independent | rect. | 18 | 18 |
| 36 | 21.51 | temperature | 30 | 10 | > th | dose independent | rect. | 9 | 3 |
| 53 | 21.55 | temperature | 30 | 90 | > th | dose independent | rect. | 11 | 1 |
| 54 | 21.55 | temperature | 30 | 10 | > th | dose independent | rect. | 16 | 20 |
| 74 | 21.59 | temperature | 30 | 10 | > th | dose dependent | rect. | 16 | 21 |
| 123 | 21.70 | temperature | 30 | 10 | > th | dose dependent | sin | 8 | NA |
| 159 | 21.75 | temperature | 30 | 30 | > th | dose independent | sin | 8 | NA |
| 185 | 21.84 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 11 |
| 208 | 21.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 238 | 21.93 | radiation | 1 | 1440 | > th | dose independent | sin | 4 | NA |
| 241 | 21.94 | radiation | 1 | 1440 | < th | dose independent | sin | 3 | NA |
| 402 | 22.12 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 411 | 22.13 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 413 | 22.15 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 454 | 22.15 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 460 | 22.16 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 508 | 22.16 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 513 | 22.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 539 | 22.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 548 | 22.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 11 |
| 598 | 22.23 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 14 |
| 620 | 22.24 | radiation | 1 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 621 | 22.24 | radiation | 1 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 634 | 22.25 | temperature | 30 | 30 | < th | dose independent | sin | 4 | NA |
| 644 | 22.26 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 14 |
| 705 | 22.30 | radiation | 1 | 1440 | < th | dose dependent | sin | 3 | NA |
| 753 | 22.34 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 794 | 22.36 | radiation | 1 | 1440 | > th | dose independent | sin | 11 | NA |
| 801 | 22.36 | wind | 1 | 720 | > th | dose independent | rect. | 6 | 16 |
| 803 | 22.36 | temperature | 15 | 720 | > th | dose independent | rect. | 4 | 17 |
| 823 | 22.38 | radiation | 1 | 1440 | < th | dose independent | sin | 11 | NA |
| 824 | 22.38 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 889 | 22.41 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 921 | 22.42 | humidity | 80 | 1440 | < th | dose independent | sin | 6 | NA |
| 922 | 22.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 928 | 22.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 931 | 22.43 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 938 | 22.43 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 13 |
| 978 | 22.45 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 3 |