BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0190900 Os07g0190900|AK073533
         (865 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0190900  SMAD/FHA domain containing protein                 1753   0.0  
Os03g0800800  SMAD/FHA domain containing protein                  592   e-169

>Os07g0190900 SMAD/FHA domain containing protein
          Length = 865

 Score = 1753 bits (4540), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 845/865 (97%), Positives = 845/865 (97%)

Query: 1   MVTMSAAASWTAEDDVLLKNAVEAGASLESLAKGAVCFSRKFTLQELQDRWSSLLYDSET 60
           MVTMSAAASWTAEDDVLLKNAVEAGASLESLAKGAVCFSRKFTLQELQDRWSSLLYDSET
Sbjct: 1   MVTMSAAASWTAEDDVLLKNAVEAGASLESLAKGAVCFSRKFTLQELQDRWSSLLYDSET 60

Query: 61  SGQASALIVKYETELSTSNPTKAHKLFYVRRKHLSLRKRKIESVKNQYYAMRKRICHDPC 120
           SGQASALIVKYETELSTSNPTKAHKLFYVRRKHLSLRKRKIESVKNQYYAMRKRICHDPC
Sbjct: 61  SGQASALIVKYETELSTSNPTKAHKLFYVRRKHLSLRKRKIESVKNQYYAMRKRICHDPC 120

Query: 121 LAADFGYVITPCSCPVGSDCVCDGLFNLLEDNHLIHNVNQAPDVVNGYGHIGESYADGQD 180
           LAADFGYVITPCSCPVGSDCVCDGLFNLLEDNHLIHNVNQAPDVVNGYGHIGESYADGQD
Sbjct: 121 LAADFGYVITPCSCPVGSDCVCDGLFNLLEDNHLIHNVNQAPDVVNGYGHIGESYADGQD 180

Query: 181 VHAKDNGHYISHRRHDKAAGTVASDGSTNCESANGCSDVGKLYGYNFMPKNIQSSERNIA 240
           VHAKDNGHYISHRRHDKAAGTVASDGSTNCESANGCSDVGKLYGYNFMPKNIQSSERNIA
Sbjct: 181 VHAKDNGHYISHRRHDKAAGTVASDGSTNCESANGCSDVGKLYGYNFMPKNIQSSERNIA 240

Query: 241 SPKDLSDVQDCVQPQQPILCEESANGMTGLKALLNTDQDCIKQNQFSGNSNEILQDPGSL 300
           SPKDLSDVQDCVQPQQPILCEESANGMTGLKALLNTDQDCIKQNQFSGNSNEILQDPGSL
Sbjct: 241 SPKDLSDVQDCVQPQQPILCEESANGMTGLKALLNTDQDCIKQNQFSGNSNEILQDPGSL 300

Query: 301 KAMSEHWCSQAPSAPTRKKFQGVNAPDMLTDVHHKEQEILAFSDDKKKETTNIDTFSCKV 360
           KAMSEHWCSQAPSAPTRKKFQGVNAPDMLTDVHHKEQEILAFSDDKKKETTNIDTFSCKV
Sbjct: 301 KAMSEHWCSQAPSAPTRKKFQGVNAPDMLTDVHHKEQEILAFSDDKKKETTNIDTFSCKV 360

Query: 361 NVENGMSGSGLDDATEGEVMHSCLMDASQGEDFELLNSENILDSSLDPNLEGLGDRHANV 420
           NVENGMSGSGLDDATEGEVMHSCLMDASQGEDFELLNSENILDSSLDPNLEGLGDRHANV
Sbjct: 361 NVENGMSGSGLDDATEGEVMHSCLMDASQGEDFELLNSENILDSSLDPNLEGLGDRHANV 420

Query: 421 ILKDISKEHLLDIPHVSSACGNNTDPIHEKHDVADISGVDMIYTTEVPFPCAGIVCILNT 480
           ILKDISKEHLLDIPHVSSACGNNTDPIHEKHDVADISGVDMIYTTEVPFPCAGIVCILNT
Sbjct: 421 ILKDISKEHLLDIPHVSSACGNNTDPIHEKHDVADISGVDMIYTTEVPFPCAGIVCILNT 480

Query: 481 EDPEIPCNDDIFTPGPVASTSTCDQNSQHNMHLVSAKPIPPLNAADLNHTDLVSDVQPLL 540
           EDPEIPCNDDIFTPGPVASTSTCDQNSQHNMHLVSAKPIPPLNAADLNHTDLVSDVQPLL
Sbjct: 481 EDPEIPCNDDIFTPGPVASTSTCDQNSQHNMHLVSAKPIPPLNAADLNHTDLVSDVQPLL 540

Query: 541 LTMKLEPYTLEQKETLVGLNESCTVRSKSPVMPVDASNANACTSTFHSAAEFVKKSTCGL 600
           LTMKLEPYTLEQKETLVGLNESCTVRSKSPVMPVDASNANACTSTFHSAAEFVKKSTCGL
Sbjct: 541 LTMKLEPYTLEQKETLVGLNESCTVRSKSPVMPVDASNANACTSTFHSAAEFVKKSTCGL 600

Query: 601 VQHECFDNLGSVSLDECIGVLDEMNSKVPDESGISCDATTQNSISAHALPDVEFLNXXXX 660
           VQHECFDNLGSVSLDECIGVLDEMNSKVPDESGISCDATTQNSISAHALPDVEFLN    
Sbjct: 601 VQHECFDNLGSVSLDECIGVLDEMNSKVPDESGISCDATTQNSISAHALPDVEFLNPITT 660

Query: 661 XXXXXXXXXXXXXXXXNYFDIEALILDQDLIPWDQESDFIQLEVSRFQSLESRKDLIRLE 720
                           NYFDIEALILDQDLIPWDQESDFIQLEVSRFQSLESRKDLIRLE
Sbjct: 661 TSSPEGGGSDSEDGIPNYFDIEALILDQDLIPWDQESDFIQLEVSRFQSLESRKDLIRLE 720

Query: 721 RGARSNTNRSIMSHGAFAVLYGQHLKYYIKDPEVTLGRETSEEHVDIDLGKEGKANTISR 780
           RGARSNTNRSIMSHGAFAVLYGQHLKYYIKDPEVTLGRETSEEHVDIDLGKEGKANTISR
Sbjct: 721 RGARSNTNRSIMSHGAFAVLYGQHLKYYIKDPEVTLGRETSEEHVDIDLGKEGKANTISR 780

Query: 781 QQAIIKMDKGGSFHITNIGKAPIFVNSKEVPCNECTHLISDALLQIRHMKFIFHINQDAV 840
           QQAIIKMDKGGSFHITNIGKAPIFVNSKEVPCNECTHLISDALLQIRHMKFIFHINQDAV
Sbjct: 781 QQAIIKMDKGGSFHITNIGKAPIFVNSKEVPCNECTHLISDALLQIRHMKFIFHINQDAV 840

Query: 841 RQHIVRSRRGTSQGKYAVFNWDEKP 865
           RQHIVRSRRGTSQGKYAVFNWDEKP
Sbjct: 841 RQHIVRSRRGTSQGKYAVFNWDEKP 865



>Os03g0800800 SMAD/FHA domain containing protein
          Length = 856

 Score =  592 bits (1526), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 371/882 (42%), Positives = 503/882 (57%), Gaps = 65/882 (7%)

Query: 1   MVTMSAAASWTAEDDVLLKNAVEAGASLESLAKGAVCFSRKFTLQELQDRWSSLLYDSET 60
           +   +++A W  EDD+LLKNAVE GASLE+LAKGAVCFSRKFTL+E+QDRW+SLLYD E 
Sbjct: 4   LAAATSSAIWLVEDDILLKNAVETGASLEALAKGAVCFSRKFTLKEIQDRWNSLLYDPEI 63

Query: 61  SGQASALIVKYETELSTSNPTKAHKLFYVRRKHLSLRKRKIESVKNQYYAMRKRICHDPC 120
           S QASA +V+YE +LSTSNP KA K+   ++K LS +KRKI+SVKNQYYAMRKR+ ++PC
Sbjct: 64  STQASARMVEYENDLSTSNPLKA-KVINAKQKDLSFQKRKIDSVKNQYYAMRKRVRNEPC 122

Query: 121 LAADFGYVITPCSCPV-GSDCVCDGLFNLLEDNHLIHNVNQAPDVVNGYGHIGESYADGQ 179
              D G++I PCSC + G  CVC GL    + +H++HN       +N +G    SY  GQ
Sbjct: 123 STVDLGFLIDPCSCTMNGGQCVCGGLDKHSQGHHVVHNTEPGVSTMNCFGQQDGSYNGGQ 182

Query: 180 DVHAKDNGHYISHRRHDKAAGTVASDGSTNCESANGCSDVGKLYGYN-FMPKNIQSSERN 238
            +    NGH    +  +    ++   G        G SDV ++Y  + +  K+  ++E N
Sbjct: 183 TMFVGMNGHSFPAKHAE--TDSMVKGGDIANSVPYGYSDVSQIYEQDAYTRKDPDTNEGN 240

Query: 239 IASPKDLSDVQDCVQPQQPILCEESANGMTGLKALLNTDQDCIKQNQFSGNSNEILQDPG 298
             S K ++D Q  +Q Q      +  + +T  K ++  D   ++   F  NS+  +Q+PG
Sbjct: 241 NVSLKGITDFQGSMQFQNLGSSNQCGSKVTESKTIVIADHCGVEHVHFPVNSSSRMQEPG 300

Query: 299 SLKAMSEHWCSQAPSAPTRKKFQGVNAPDMLTDVHHKEQEILAFSDDKKKETTNIDTFSC 358
           SL+ + +   SQ P               + T+V   E+      DDKK +T N D  + 
Sbjct: 301 SLQVIGQPEGSQTPVG------------SIWTEV--DERGTFTLDDDKKIKTDNSDPLAL 346

Query: 359 KVNVENGMSGSGLDDA--TEGEVMHSCLMDASQGEDFELLNSENILDSSLDPNLEGLGDR 416
           + N++ G+  +GLD A  TEG+ M       S  ED +LLN EN L+   + N E L D 
Sbjct: 347 QPNLDGGICAAGLDHAAITEGDFMDFPYF--SNSEDLDLLNGENFLNIPHETNQEDLDD- 403

Query: 417 HANVILKDISKEHLLDIPHVSSA--CGNNTDPIHEKHDVADISGVDMIYTT-EVPFPCAG 473
                      +H+ ++ H   A  C + TDP H KH+V D+SG+  + T+ EVP+P   
Sbjct: 404 ----------PDHVKNLLHPDEANICYDQTDPDHVKHNV-DVSGIISVPTSLEVPYPGRF 452

Query: 474 IVCILNTEDPEIPCNDDIFTPG--PVASTST-CDQNSQHNMHLVSAKPIPPLNAADLNHT 530
           + C+LNTEDPEIPCNDD+  PG  P+  ++T   QNS+HN  LVS    P  N    N +
Sbjct: 453 VECVLNTEDPEIPCNDDVIFPGESPLQCSATDFGQNSEHNTCLVSPATSPASNVEHSNVS 512

Query: 531 DL-------VSDVQPLLLTMKLEPYTLEQKETLVGLNESCTVRSKSPVMP---------- 573
           D        +++ +P    M L P T EQKE     ++ C      P             
Sbjct: 513 DKALIKREDMTNTEPSSQPMNLSPPTSEQKEGSTAPSKGCVPLGAEPSEGPSTAGTLVHC 572

Query: 574 -VDASNANACTSTFHS--AAEFVKKSTCGLVQHECFDNLGSVSLDECIGVLDEMNSKVPD 630
            VD ++AN+C S   S  AA F + S C L Q   FD+  S  L   + V D MN    D
Sbjct: 573 HVDTNDANSCASNLPSISAAVFAEGSPCHLEQQNNFDDSLSFPLPNSVEVPDHMNYNSHD 632

Query: 631 -ESGISCDATTQNSISAHALPDVEFLNXXXXXXXXXXXX--XXXXXXXXNYFDIEALILD 687
            +  +   A  QN I  H LPD+   +                      NY+D+EALILD
Sbjct: 633 NQPELGDGAPLQNCIPPHELPDLGLQDPITTVPVSNQVEECSDNENDVPNYYDLEALILD 692

Query: 688 QDLIPWDQESDFIQLEVSRFQSLESRKDLIRLERGARSNTNRSIMSHGAFAVLYGQHLKY 747
           QDLIPW Q+S+     VSRFQ  ESRK LIRLE+ ARS  NR+I+S GAFAV+YG HL+Y
Sbjct: 693 QDLIPWVQDSE-QHPGVSRFQHPESRKSLIRLEQSARSYMNRAIVSKGAFAVIYGLHLRY 751

Query: 748 YIKDPEVTLGRETSEEHVDIDLGKEGKANTISRQQAIIKMDKGGSFHITNIGKAPIFVNS 807
           Y+KD EVTLGRET +  VD+DLGKEG+AN ISR+QA+IKMD+ GSFHI NIGK  IFVNS
Sbjct: 752 YMKDSEVTLGRETEDIKVDVDLGKEGRANKISRRQAVIKMDEAGSFHIKNIGKCSIFVNS 811

Query: 808 KEVPCNECTHLISDALLQIRHMKFIFHINQDAVRQHIVRSRR 849
           KEVP  +   L SD+L++I+ M+FIFH+NQDAV Q + R+ +
Sbjct: 812 KEVPSCKRIILSSDSLIEIKDMRFIFHVNQDAVTQFVTRTPK 853



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,876,021
Number of extensions: 1236920
Number of successful extensions: 2816
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2804
Number of HSP's successfully gapped: 2
Length of query: 865
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 756
Effective length of database: 11,344,475
Effective search space: 8576423100
Effective search space used: 8576423100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)