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Os07g0190900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SMAD/FHA domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0124) R2 : 3.26e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00319 (0.0261) R2dN8 : 4.22e-05 R2N8 : 3.26e-05
σ : 0.234
deviance : 25.11
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.07 0.188 11.5 0.421 0.331 -0.435 0.14 1.35 0.137 1.7 7.979 1020 -- --
16.4 0.189 11.6 0.327 0.302 -0.461 0.343 -- 0.139 1.84 6.6 11296 -- --
16.14 0.187 11.5 0.434 0.331 -0.434 -- 1.44 0.141 1.71 7.231 1010 -- --
16.77 0.191 11.6 0.326 0.295 -0.478 -- -- 0.152 2.27 7.734 11348 -- --
20.36 0.211 11.6 0.212 -- -0.566 -- 0.546 0.0956 -- 7.231 1010 -- --
20.13 0.21 11.6 0.0331 0.276 -- 0.312 -- -0.00397 2.06 -- -- -- --
20.49 0.212 11.6 0.0237 0.278 -- -- -- -0.00599 2.26 -- -- -- --
20.61 0.212 11.6 0.137 -- -0.557 -- -- 0.0748 -- 7.734 11348 -- --
18.24 0.199 11.6 -- 0.289 -0.31 -- -- 0.066 2.2 10.46 9152 -- --
25.08 0.234 11.6 0.0354 -- -- -- -- 0.000734 -- -- -- -- --
20.51 0.212 11.6 -- 0.278 -- -- -- -0.00863 2.26 -- -- -- --
21.07 0.215 11.6 -- -- -0.514 -- -- 0.0548 -- 7.734 11348 -- --
25.11 0.234 11.6 -- -- -- -- -- -0.00319 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.16 radiation 20 4320 < th dose independent rect. 24 8
3 15.16 radiation 20 4320 < th dose independent rect. 19 13
5 15.17 radiation 20 4320 < th dose independent rect. 5 3
15 15.25 wind 3 43200 < th dose dependent rect. 1 4
16 15.28 wind 3 43200 < th dose dependent rect. 3 9
19 15.31 wind 3 43200 < th dose independent rect. 3 10
21 15.32 humidity 80 43200 < th dose independent rect. 4 3
22 15.32 wind 3 43200 < th dose dependent rect. 3 2
24 15.33 wind 3 43200 < th dose independent rect. 3 1
26 15.33 wind 3 43200 > th dose independent rect. 3 10
35 15.36 wind 3 43200 < th dose independent rect. 3 4
38 15.37 wind 3 43200 > th dose independent rect. 3 1
39 15.37 wind 3 43200 > th dose independent rect. 3 4
52 15.39 wind 3 43200 < th dose dependent rect. 3 4
69 15.42 wind 3 43200 < th dose independent rect. 3 6
80 15.43 humidity 80 43200 < th dose independent rect. 22 9
94 15.44 wind 1 43200 > th dose dependent rect. 3 11
98 15.44 humidity 90 14400 > th dose dependent rect. 1 16
103 15.45 wind 3 43200 > th dose independent rect. 3 6
110 15.45 humidity 90 14400 > th dose dependent rect. 5 5
117 15.45 humidity 90 14400 > th dose dependent rect. 1 19
122 15.46 humidity 90 14400 > th dose dependent sin 3 NA
145 15.47 wind 1 43200 > th dose dependent rect. 3 4
158 15.48 humidity 80 43200 > th dose independent rect. 3 4
174 15.49 humidity 80 43200 > th dose independent rect. 4 1
184 15.49 wind 5 43200 < th dose dependent sin 6 NA
199 15.50 humidity 90 14400 > th dose independent rect. 24 15
243 15.51 wind 5 43200 < th dose dependent rect. 20 17
261 15.52 radiation 20 4320 > th dose dependent rect. 6 2
277 15.52 radiation 10 4320 > th dose dependent rect. 17 13
288 15.53 humidity 80 43200 < th dose independent rect. 22 1
291 15.53 humidity 90 14400 > th dose independent rect. 1 10
349 15.55 humidity 90 14400 > th dose independent sin 6 NA
361 15.55 humidity 90 14400 < th dose independent rect. 24 15
364 15.55 wind 1 43200 > th dose dependent sin 5 NA
423 15.57 radiation 1 14400 > th dose independent rect. 18 11
428 15.57 radiation 1 4320 > th dose dependent rect. 7 1
429 15.57 radiation 40 4320 < th dose dependent rect. 7 1
455 15.57 humidity 90 14400 > th dose dependent rect. 5 23
458 15.58 wind 3 43200 < th dose independent sin 6 NA
495 15.59 wind 3 43200 > th dose independent sin 5 NA
511 15.59 wind 1 43200 > th dose dependent rect. 3 1
550 15.60 humidity 90 14400 > th dose dependent no NA NA
569 15.60 humidity 90 14400 > th dose dependent rect. 9 22
570 15.60 humidity 90 14400 > th dose dependent rect. 12 22
587 15.61 humidity 90 14400 < th dose independent sin 7 NA
589 15.61 wind 3 43200 > th dose independent rect. 10 3
633 15.61 humidity 90 14400 > th dose dependent rect. 14 20
678 15.62 humidity 80 43200 < th dose dependent rect. 22 10
711 15.63 temperature 10 1440 > th dose dependent rect. 17 2
746 15.64 humidity 90 14400 < th dose independent rect. 20 13
748 15.64 radiation 1 14400 > th dose independent rect. 18 14
753 15.64 radiation 1 14400 > th dose independent rect. 18 16
811 15.65 humidity 90 14400 > th dose independent rect. 12 19
823 15.65 humidity 80 43200 < th dose dependent rect. 22 1
882 15.66 humidity 70 14400 < th dose dependent rect. 18 3
887 15.66 temperature 10 1440 > th dose dependent rect. 13 7
902 15.66 humidity 90 14400 > th dose dependent rect. 9 19
905 15.67 wind 9 43200 > th dose independent rect. 18 2
908 15.67 humidity 90 14400 > th dose independent rect. 19 12
925 15.67 humidity 80 43200 < th dose dependent rect. 3 4
935 15.67 wind 1 43200 > th dose dependent rect. 24 7
947 15.67 radiation 30 4320 < th dose dependent rect. 18 8
972 15.67 humidity 90 14400 > th dose dependent rect. 11 17
981 15.68 radiation 1 14400 > th dose independent rect. 18 1