BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0187400 Os07g0187400|003-125-F07
         (123 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0187400  Conserved hypothetical protein                      221   9e-59
Os06g0155600  Peptidase S16, lon protease family protein           72   7e-14

>Os07g0187400 Conserved hypothetical protein
          Length = 123

 Score =  221 bits (563), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 112/123 (91%), Positives = 112/123 (91%)

Query: 1   LIERCSLCSTGIFLTTTFHSLHSQEARLAIEYIVIPGGEPVELLPRCSEIVARQLELVES 60
           LIERCSLCSTGIFLTTTFHSLHSQEARLAIEYIVIPGGEPVELLPRCSEIVARQLELVES
Sbjct: 1   LIERCSLCSTGIFLTTTFHSLHSQEARLAIEYIVIPGGEPVELLPRCSEIVARQLELVES 60

Query: 61  YQLLAETFGTDSNSRLQILPVKITXXXXXXXXXXXMPKQGSSDLIVSDNGGGSSFSRLPF 120
           YQLLAETFGTDSNSRLQILPVKIT           MPKQGSSDLIVSDNGGGSSFSRLPF
Sbjct: 61  YQLLAETFGTDSNSRLQILPVKITKKSSSKGSAGSMPKQGSSDLIVSDNGGGSSFSRLPF 120

Query: 121 LPK 123
           LPK
Sbjct: 121 LPK 123



>Os06g0155600 Peptidase S16, lon protease family protein
          Length = 643

 Score = 72.4 bits (176), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 9/105 (8%)

Query: 24  QEARLAIEYIVIPGGEPVELLPRCSEIVARQLELVESYQLLAETFGTDSNSRLQILPVKI 83
           +EARLAIE +VIP GE V+LLPR   I+A Q++LVES++L  E+ G + N+ L+ILP  +
Sbjct: 543 EEARLAIEQVVIPKGESVQLLPRPPSIIASQVDLVESFKLKWESIGQEPNACLRILPQFV 602

Query: 84  TXXXXXXXXXXXMPKQGSSDLIVSDNGGGSSF-----SRLPFLPK 123
                       + ++ +++L  SDN     +     SRLPFLP+
Sbjct: 603 G----VEEGGKSVKQEAATELTDSDNSDDMDYKQNGVSRLPFLPE 643



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.137    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,913,234
Number of extensions: 122855
Number of successful extensions: 251
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 2
Length of query: 123
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 35
Effective length of database: 12,440,969
Effective search space: 435433915
Effective search space used: 435433915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)