Os06g0155600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase S16, lon protease family protein.
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Os06g0155600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase S16, lon protease family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.56 | 0.228 | 12.2 | 0.104 | 0.625 | 0.551 | 0.52 | 0.0382 | -0.125 | 10.1 | 82.54 | 1232 | -- | -- |
| 23.54 | 0.226 | 12.2 | 0.11 | 0.631 | 0.553 | 0.518 | -- | -0.128 | 10.1 | 83.35 | 1197 | -- | -- |
| 24.49 | 0.231 | 12.2 | 0.114 | 0.649 | 0.558 | -- | -0.236 | -0.143 | 10 | 84.29 | 1143 | -- | -- |
| 24.54 | 0.231 | 12.2 | 0.129 | 0.668 | 0.569 | -- | -- | -0.124 | 10 | 84 | 1134 | -- | -- |
| 43.32 | 0.307 | 12.2 | 0.129 | -- | 0.486 | -- | -0.00469 | -0.149 | -- | 85 | 1503 | -- | -- |
| 30.26 | 0.258 | 12.2 | 0.19 | 0.557 | -- | 0.425 | -- | -0.139 | 9.63 | -- | -- | -- | -- |
| 30.93 | 0.26 | 12.2 | 0.205 | 0.556 | -- | -- | -- | -0.139 | 9.55 | -- | -- | -- | -- |
| 43.18 | 0.306 | 12.2 | 0.138 | -- | 0.479 | -- | -- | -0.125 | -- | 84.52 | 1494 | -- | -- |
| 24.94 | 0.233 | 12.2 | -- | 0.68 | 0.588 | -- | -- | -0.135 | 10 | 82.4 | 1113 | -- | -- |
| 49.19 | 0.328 | 12.2 | 0.201 | -- | -- | -- | -- | -0.137 | -- | -- | -- | -- | -- |
| 32.04 | 0.265 | 12.2 | -- | 0.556 | -- | -- | -- | -0.162 | 9.53 | -- | -- | -- | -- |
| 43.64 | 0.308 | 12.2 | -- | -- | 0.497 | -- | -- | -0.136 | -- | 83.43 | 1492 | -- | -- |
| 50.25 | 0.331 | 12.2 | -- | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.24 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 2 | 23.25 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 3 | 23.32 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 7 | 23.40 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 9 | 23.42 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 24 | 23.56 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 37 | 23.72 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 43 | 23.75 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 55 | 23.79 | humidity | 90 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 66 | 23.82 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 71 | 23.84 | temperature | 25 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 90 | 23.87 | temperature | 25 | 14400 | < th | dose dependent | rect. | 17 | 6 |
| 116 | 23.91 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 117 | 23.91 | temperature | 25 | 14400 | < th | dose dependent | sin | 17 | NA |
| 130 | 23.92 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 136 | 23.92 | temperature | 25 | 14400 | < th | dose dependent | rect. | 10 | 16 |
| 147 | 23.93 | radiation | 20 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 175 | 23.94 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 204 | 23.95 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 223 | 23.96 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 229 | 23.96 | radiation | 20 | 1440 | < th | dose dependent | rect. | 7 | 16 |
| 257 | 23.97 | temperature | 25 | 14400 | < th | dose dependent | rect. | 3 | 19 |
| 269 | 23.97 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 281 | 23.98 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 322 | 23.99 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 366 | 24.00 | humidity | 80 | 1440 | < th | dose dependent | sin | 0 | NA |
| 389 | 24.00 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 399 | 24.01 | temperature | 25 | 14400 | < th | dose dependent | no | NA | NA |
| 428 | 24.01 | temperature | 25 | 14400 | < th | dose dependent | rect. | 13 | 23 |
| 476 | 24.02 | temperature | 25 | 14400 | < th | dose dependent | rect. | 19 | 23 |
| 483 | 24.03 | radiation | 30 | 1440 | < th | dose dependent | sin | 0 | NA |
| 491 | 24.03 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 557 | 24.04 | radiation | 30 | 1440 | < th | dose dependent | rect. | 23 | 17 |
| 575 | 24.04 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 22 |
| 579 | 24.05 | radiation | 20 | 1440 | < th | dose independent | sin | 1 | NA |
| 580 | 24.05 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 588 | 24.05 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 589 | 24.05 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 631 | 24.06 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 652 | 24.06 | temperature | 25 | 14400 | < th | dose dependent | sin | 1 | NA |
| 676 | 24.06 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 14 |
| 772 | 24.08 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 820 | 24.09 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 821 | 24.09 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 886 | 24.10 | radiation | 20 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 926 | 24.10 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 23 |