BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0155600 Os06g0155600|AK101138
(643 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G73170.1 | chr1:27511722-27514783 REVERSE LENGTH=667 627 e-180
AT3G10420.2 | chr3:3239307-3242274 FORWARD LENGTH=685 510 e-145
AT1G33290.1 | chr1:12074125-12075989 FORWARD LENGTH=380 319 3e-87
>AT1G73170.1 | chr1:27511722-27514783 REVERSE LENGTH=667
Length = 666
Score = 627 bits (1618), Expect = e-180, Method: Compositional matrix adjust.
Identities = 337/572 (58%), Positives = 416/572 (72%), Gaps = 13/572 (2%)
Query: 81 HPELPALVEVVMDLGRPPLARFPSGDFLLSQSPISFDDLRHATSQVGDFGADNRAGISRT 140
HPE+ L+E+V+DLGR PLARFPSGDF++S + DL A SQVG+F DNRAGISRT
Sbjct: 99 HPEISELIEIVLDLGRKPLARFPSGDFVISDDAVRVKDLEFAVSQVGEFTNDNRAGISRT 158
Query: 141 LHRISAIRNRKGAIIGLTCRVGRAVPGSANLLQDLVKDGGSLLLIGPPGVGKTTVIREIA 200
LHRISAIRNRKG IIGLTCRVGR+V GSANLL+DLV+DG SLLLIGPPGVGKTT+IRE+A
Sbjct: 159 LHRISAIRNRKGEIIGLTCRVGRSVRGSANLLRDLVQDGNSLLLIGPPGVGKTTMIREVA 218
Query: 201 RMLADDYRKRVMIVDTSNEXXXXXXXXXXXXXNARRLQVPNQDMQHKVLIEAVENHMPQA 260
RML +DY KRVMIVDTSNE NARR+QVPN D+QHKVLIEAVENHMPQ
Sbjct: 219 RMLGNDYEKRVMIVDTSNEIGGDGDIPHPGIGNARRMQVPNSDIQHKVLIEAVENHMPQV 278
Query: 261 IVIDEIGTKLEAMAASTIAQRGIQLVATAHGITIENLIMNPSLDMLVGGVQSVTLGDEEA 320
IVIDEIGTKLEA+AASTIA+RGIQLVATAHG TIENLI NPSLD+LVGGVQSVTLGDEEA
Sbjct: 279 IVIDEIGTKLEAIAASTIAERGIQLVATAHGATIENLIKNPSLDLLVGGVQSVTLGDEEA 338
Query: 321 NRRGVQKTVLERKGPSTFTCAAEIVSKIELRVHRSLEDTVDALLAGKMPNVEIRKVGSKG 380
RRG QKTVLERKGPSTF C AEIVSK E+RVHRSLE TVDA+LAG++PNVEIRK+ S G
Sbjct: 339 TRRGGQKTVLERKGPSTFNCGAEIVSKTEVRVHRSLEATVDAILAGRLPNVEIRKIKSHG 398
Query: 381 PVQEVYVQKE-RLDLGPSEGATQLDTDSLSNARRSLDSAFNLDPAEGHIGRSTEAEPDLN 439
EV ++KE +D + + +T +S + + L E S+E + +
Sbjct: 399 V--EVIMEKEPFIDEKTVDKKHEEETLDVSKLTKEETVSEVLQTKEITEAESSEKDTLMY 456
Query: 440 LYAYGISESTALQAIKQLELEDIVTLTYNISEADAVIALQSKLKKNTQIQAVVKSQDIPV 499
LY YGI+EST LQAIKQLE+E V LT +ISEA+A++ALQ+K++KN +I++ S IPV
Sbjct: 457 LYVYGIAESTVLQAIKQLEMETAVELTDDISEAEALLALQAKIRKNPRIKSFATSHGIPV 516
Query: 500 FFTKTNSLVQIRRALRALVDDHTDGLMDF-EDTEVRSSEETDALEEARLAIEQVVIPKGE 558
+ TKTNS +Q+ +A+RAL+ D+ DGL +F + ++ SE+ DALEEARLAIE++VIPK E
Sbjct: 517 YVTKTNSGIQVAKAIRALLTDYEDGLGEFGSEDRLKLSEKMDALEEARLAIERIVIPKKE 576
Query: 559 SVQLLPRPPSIIASQVDLVESFKLKWESIGQEPNACLRILPQFVGVEEGGKSVKQEAATE 618
+ LLPRPP I++ Q LV + L+ E + LRILP + + + E
Sbjct: 577 TTDLLPRPPRIVSLQGKLVRKYNLRSERKWRGDEMYLRILPYSTEEDRDDREDEGEFGE- 635
Query: 619 LTDSDNSDDMDYKQ-------NGVSRLPFLPE 643
+ + D++ + +G+ RLP LP+
Sbjct: 636 -ANGEELDELGFATGESNDSPSGIDRLPLLPD 666
>AT3G10420.2 | chr3:3239307-3242274 FORWARD LENGTH=685
Length = 684
Score = 510 bits (1314), Expect = e-145, Method: Compositional matrix adjust.
Identities = 285/580 (49%), Positives = 388/580 (66%), Gaps = 31/580 (5%)
Query: 81 HPELPALVEVVMDLGRPPLARFPSGDFLLSQSPISFDDLRHATSQVGDFGADNRAGISRT 140
H + L+EVVMDLGR PLARFPSGD+++S+ P++ DL A S+VGDF DNR+GI R+
Sbjct: 115 HEAIEELIEVVMDLGRKPLARFPSGDWVISEQPVTHQDLELAVSKVGDFSDDNRSGIDRS 174
Query: 141 LHRISAIRNRKGAIIGLTCRVGRAVPGSANLLQDLVKDGGSLLLIGPPGVGKTTVIREIA 200
LHRISAIRNRK +IGLTCRVGR V GSA +++DL++ GGS+L+IG PGVGKTT+IREIA
Sbjct: 175 LHRISAIRNRKLQVIGLTCRVGRVVSGSAEIIRDLIEGGGSILVIGSPGVGKTTLIREIA 234
Query: 201 RMLADDYRKRVMIVDTSNEXXXXXXXXXXXXXNARRLQVPNQDMQHKVLIEAVENHMPQA 260
RMLAD++RKRV+IVDTSNE ARR+QVPN ++QH V+IEAVENHMP+
Sbjct: 235 RMLADEHRKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNLQHDVMIEAVENHMPET 294
Query: 261 IVIDEIGTKLEAMAASTIAQRGIQLVATAHGITIENLIMNPSLDMLVGGVQSVTLGDEEA 320
I+IDEIGT+LEA+AASTIAQRG+QLVATAHG+TI+N+I NPSL +L+GG++SVTLGDEEA
Sbjct: 295 IIIDEIGTELEALAASTIAQRGVQLVATAHGMTIDNIIKNPSLQILIGGIESVTLGDEEA 354
Query: 321 NRRGVQKTVLERKGPSTFTCAAEIVSKIELRVHRSLEDTVDALLAGKMPNVEIRKVGSKG 380
+R VQKT+LERKGP TFTCA E++S+ E RVH+ L+ TVDA+LAGK EIR++ +
Sbjct: 355 RKRKVQKTILERKGPPTFTCAVEMISRTECRVHQRLDVTVDAILAGKSAPFEIRQIRGED 414
Query: 381 PVQEVYVQKERLDLGPSEGATQLDTDSLSN-ARRSLDSAFNL---DPAEGHIGRSTEAEP 436
V V L+ E A L+ D +S D F L + A + S + P
Sbjct: 415 DVPHKLVTPIPLENLEEEPAPLLNRDFVSELLSDDEDEDFLLIRSNKARSNTYTSPRSSP 474
Query: 437 DLNLYAYGISESTALQAIKQLELEDIVTLTYNISEADAVIALQSKLKKNTQIQAVVKSQD 496
+++Y Y + E+ LQ + + L+D + +T ++ EAD ++A S+LK+N+ I+ V K
Sbjct: 475 -VHVYTYNVLEADLLQVAEVMGLDDEIEVTDDVGEADVILASSSELKQNSSIRRVAKLHK 533
Query: 497 IPVFFTKTNSLVQIRRALRALVDDHTDGLM-------DFEDTEVR--------SSEETDA 541
+P+F K+ ++ Q+ +A+R ++ + G +D E++ S EE DA
Sbjct: 534 LPIFVIKSTTMAQMVKAVRMILGRESFGSAPKAIEKSSVDDIEIKDDAPESKPSLEELDA 593
Query: 542 LEEARLAIEQVVIPKGESVQLLPRPPSIIASQVDLVESFKLKWESIGQEPNACLRILPQF 601
LEE RLAIE +VIP GE V+LLPR II Q++LVES++L E++G N L+ILP+
Sbjct: 594 LEEVRLAIEYIVIPGGEPVELLPRRSDIIVRQLELVESYQLAVENLGTHLNPRLQILPR- 652
Query: 602 VGVEEGGKSVKQEAATELTDSDNSDDMDYKQNGVSRLPFL 641
+S K+ + + S D G +RLPFL
Sbjct: 653 -------RSTKKTLTS--SSPQKSADGSMGTTG-TRLPFL 682
>AT1G33290.1 | chr1:12074125-12075989 FORWARD LENGTH=380
Length = 379
Score = 319 bits (818), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 161/292 (55%), Positives = 213/292 (72%), Gaps = 5/292 (1%)
Query: 87 LVEVVMDLGRPPLARF---PSGDFLLSQSPISFDDLRHATSQVGDFGADNRAGISRTLHR 143
LVEV+MDLGRPP AR+ P G +L + +S ++L A VG+FGADNRAGI TLHR
Sbjct: 70 LVEVIMDLGRPPEARYLGEPGGQYL-RNNEVSMEELEDAQELVGEFGADNRAGIEGTLHR 128
Query: 144 ISAIRNRKGAIIGLTCRVGRAVPGSANLLQDLVKDGGSLLLIGPPGVGKTTVIREIARML 203
ISAIRNRKG I+GLTCRVGRAV G ++L DL+ G S+L +G PGVGKTTV+REIAR+L
Sbjct: 129 ISAIRNRKGFIVGLTCRVGRAVSGHIDMLYDLLHYGKSILFVGRPGVGKTTVLREIARVL 188
Query: 204 ADDYRKRVMIVDTSNEXXXXXXXXXXXXXNARRLQVPNQDMQHKVLIEAVENHMPQAIVI 263
+D+++KRV+I+DTSNE +RR+QVP +QHKV+IEAVENHMPQ I++
Sbjct: 189 SDEFQKRVVIIDTSNEIGGDGDIPHSAIGGSRRMQVPKPSLQHKVMIEAVENHMPQVIIV 248
Query: 264 DEIGTKLEAMAASTIAQRGIQLVATAHGITIENLIMNPSLDMLVGGVQSVTLGDEEANRR 323
DEIGT+ EA+A +IA+RG+ L+ TAHG ++N+I NP+L L+GG+++VTLGDEEA R
Sbjct: 249 DEIGTEAEALACRSIAERGVMLIGTAHGEQLQNIIKNPTLSDLIGGIETVTLGDEEARAR 308
Query: 324 GVQKTVLERKGPSTFTCAAEIVSKIELRVHRSLEDTVDALLAGKMPNVEIRK 375
QK++LERK P TF E+ + H++ E +VD LL G+ P VE+R+
Sbjct: 309 RSQKSILERKAPPTFYFLIEMRERDYWIAHQT-EKSVDMLLRGRNPMVEVRR 359
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,838,200
Number of extensions: 447842
Number of successful extensions: 1783
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1778
Number of HSP's successfully gapped: 3
Length of query: 643
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 538
Effective length of database: 8,227,889
Effective search space: 4426604282
Effective search space used: 4426604282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)