BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0155600 Os06g0155600|AK101138
(643 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0155600 Peptidase S16, lon protease family protein 1171 0.0
Os12g0209000 Similar to Ycf45 protein 301 7e-82
Os07g0187400 Conserved hypothetical protein 73 8e-13
>Os06g0155600 Peptidase S16, lon protease family protein
Length = 643
Score = 1171 bits (3029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/643 (92%), Positives = 592/643 (92%)
Query: 1 MHLGVSLVPPLPLHFPRRAPYGFRSAAPRRIAVCPLLSVXXXXXXXXXXXXXXXXXXXXX 60
MHLGVSLVPPLPLHFPRRAPYGFRSAAPRRIAVCPLLSV
Sbjct: 1 MHLGVSLVPPLPLHFPRRAPYGFRSAAPRRIAVCPLLSVGRRRRLGAPPRAARGGGEGPE 60
Query: 61 XXXXXXXXXXXXXXXXXVEGHPELPALVEVVMDLGRPPLARFPSGDFLLSQSPISFDDLR 120
VEGHPELPALVEVVMDLGRPPLARFPSGDFLLSQSPISFDDLR
Sbjct: 61 EEMRRLLELLPGELRRRVEGHPELPALVEVVMDLGRPPLARFPSGDFLLSQSPISFDDLR 120
Query: 121 HATSQVGDFGADNRAGISRTLHRISAIRNRKGAIIGLTCRVGRAVPGSANLLQDLVKDGG 180
HATSQVGDFGADNRAGISRTLHRISAIRNRKGAIIGLTCRVGRAVPGSANLLQDLVKDGG
Sbjct: 121 HATSQVGDFGADNRAGISRTLHRISAIRNRKGAIIGLTCRVGRAVPGSANLLQDLVKDGG 180
Query: 181 SLLLIGPPGVGKTTVIREIARMLADDYRKRVMIVDTSNEXXXXXXXXXXXXXNARRLQVP 240
SLLLIGPPGVGKTTVIREIARMLADDYRKRVMIVDTSNE NARRLQVP
Sbjct: 181 SLLLIGPPGVGKTTVIREIARMLADDYRKRVMIVDTSNEIGGDGDIPHPGIGNARRLQVP 240
Query: 241 NQDMQHKVLIEAVENHMPQAIVIDEIGTKLEAMAASTIAQRGIQLVATAHGITIENLIMN 300
NQDMQHKVLIEAVENHMPQAIVIDEIGTKLEAMAASTIAQRGIQLVATAHGITIENLIMN
Sbjct: 241 NQDMQHKVLIEAVENHMPQAIVIDEIGTKLEAMAASTIAQRGIQLVATAHGITIENLIMN 300
Query: 301 PSLDMLVGGVQSVTLGDEEANRRGVQKTVLERKGPSTFTCAAEIVSKIELRVHRSLEDTV 360
PSLDMLVGGVQSVTLGDEEANRRGVQKTVLERKGPSTFTCAAEIVSKIELRVHRSLEDTV
Sbjct: 301 PSLDMLVGGVQSVTLGDEEANRRGVQKTVLERKGPSTFTCAAEIVSKIELRVHRSLEDTV 360
Query: 361 DALLAGKMPNVEIRKVGSKGPVQEVYVQKERLDLGPSEGATQLDTDSLSNARRSLDSAFN 420
DALLAGKMPNVEIRKVGSKGPVQEVYVQKERLDLGPSEGATQLDTDSLSNARRSLDSAFN
Sbjct: 361 DALLAGKMPNVEIRKVGSKGPVQEVYVQKERLDLGPSEGATQLDTDSLSNARRSLDSAFN 420
Query: 421 LDPAEGHIGRSTEAEPDLNLYAYGISESTALQAIKQLELEDIVTLTYNISEADAVIALQS 480
LDPAEGHIGRSTEAEPDLNLYAYGISESTALQAIKQLELEDIVTLTYNISEADAVIALQS
Sbjct: 421 LDPAEGHIGRSTEAEPDLNLYAYGISESTALQAIKQLELEDIVTLTYNISEADAVIALQS 480
Query: 481 KLKKNTQIQAVVKSQDIPVFFTKTNSLVQIRRALRALVDDHTDGLMDFEDTEVRSSEETD 540
KLKKNTQIQAVVKSQDIPVFFTKTNSLVQIRRALRALVDDHTDGLMDFEDTEVRSSEETD
Sbjct: 481 KLKKNTQIQAVVKSQDIPVFFTKTNSLVQIRRALRALVDDHTDGLMDFEDTEVRSSEETD 540
Query: 541 ALEEARLAIEQVVIPKGESVQLLPRPPSIIASQVDLVESFKLKWESIGQEPNACLRILPQ 600
ALEEARLAIEQVVIPKGESVQLLPRPPSIIASQVDLVESFKLKWESIGQEPNACLRILPQ
Sbjct: 541 ALEEARLAIEQVVIPKGESVQLLPRPPSIIASQVDLVESFKLKWESIGQEPNACLRILPQ 600
Query: 601 FVGVEEGGKSVKQEAATELTDSDNSDDMDYKQNGVSRLPFLPE 643
FVGVEEGGKSVKQEAATELTDSDNSDDMDYKQNGVSRLPFLPE
Sbjct: 601 FVGVEEGGKSVKQEAATELTDSDNSDDMDYKQNGVSRLPFLPE 643
>Os12g0209000 Similar to Ycf45 protein
Length = 402
Score = 301 bits (772), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 162/302 (53%), Positives = 209/302 (69%), Gaps = 4/302 (1%)
Query: 78 VEGHPELPALVEVVMDLGRPPLARF--PSGDFLLSQSPISFDDLRHATSQVGDFGADNRA 135
++ P L+EV++DLGR P ARF SG L S IS +L A VG+FG DNRA
Sbjct: 77 LQNEPRKDQLLEVILDLGRRPEARFLGDSGGQYLRDSEISQQELEEAQRAVGEFGGDNRA 136
Query: 136 GISRTLHRISAIRNRKGAIIGLTCRVGRAVPGSANLLQDLVKDGGSLLLIGPPGVGKTTV 195
GI TLHRISAIR+RKG ++GLTCRVGRAV G ++++DL+ S+L +G PGVGKTTV
Sbjct: 137 GIEGTLHRISAIRSRKGMVVGLTCRVGRAVTGHVDMVRDLLNYKESILFLGRPGVGKTTV 196
Query: 196 IREIARMLADDYRKRVMIVDTSNEXXXXXXXXXXXXXNARRLQVPNQDMQHKVLIEAVEN 255
+REIAR+LAD+++KRV+IVDTSNE ARR+QV MQH+V+IEAVEN
Sbjct: 197 MREIARVLADEFQKRVVIVDTSNEIGGDGDIPHAAIGGARRMQVAQPSMQHRVMIEAVEN 256
Query: 256 HMPQAIVIDEIGTKLEAMAASTIAQRGIQLVATAHGITIENLIMNPSLDMLVGGVQSVTL 315
HMP+ +++DEIGT+ EA A +IA+RG+ L+ TAHG + N+I NP+L L+GGV++VTL
Sbjct: 257 HMPEVVIVDEIGTEAEAQACRSIAERGVMLIGTAHGEHLANIIKNPTLSDLIGGVETVTL 316
Query: 316 GDEEANRRGVQKTVLERKGPSTFTCAAEIVSKIELRVHRSLEDTVDALLAGKMPNVEIRK 375
GDEEA R QK++LERK P TF E+ + HR+ E +VD LL GK P VE R
Sbjct: 317 GDEEARARRSQKSILERKAPPTFPFLIEMRERHYWVTHRT-ERSVDMLLHGKKPLVE-RV 374
Query: 376 VG 377
VG
Sbjct: 375 VG 376
>Os07g0187400 Conserved hypothetical protein
Length = 123
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 9/105 (8%)
Query: 543 EEARLAIEQVVIPKGESVQLLPRPPSIIASQVDLVESFKLKWESIGQEPNACLRILPQFV 602
+EARLAIE +VIP GE V+LLPR I+A Q++LVES++L E+ G + N+ L+ILP +
Sbjct: 24 QEARLAIEYIVIPGGEPVELLPRCSEIVARQLELVESYQLLAETFGTDSNSRLQILPVKI 83
Query: 603 G----VEEGGKSVKQEAATELTDSDNSDDMDYKQNGVSRLPFLPE 643
+ S+ ++ +++L SDN + SRLPFLP+
Sbjct: 84 TKKSSSKGSAGSMPKQGSSDLIVSDNGGGSSF-----SRLPFLPK 123
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,181,208
Number of extensions: 740799
Number of successful extensions: 2532
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2529
Number of HSP's successfully gapped: 3
Length of query: 643
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 536
Effective length of database: 11,448,903
Effective search space: 6136612008
Effective search space used: 6136612008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)